PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000688G0120

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 267aa MW: 29506.8 Da PI: 6.2867

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000688G0120	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.4	8.9e-43	4	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 l+pG+rF Pt+eelv++yL++k++g++ ++e+vi+ +d+++++Pw+Lp+ +++++ + w++F++r++++a+g r++r+t sgyWka g+ PH01000688G0120 4 LAPGYRFYPTEEELVCFYLRHKLDGRRrGDIERVIPVADVCSLDPWQLPEvhrgACAGDGEPWFYFCSRQEREARGGRPSRMTPSGYWKAAGTP 97 579********************996677789**********95456544557889**************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++g+ +g+kkt+vfy+grap g+kt+W m+eyr+ PH01000688G0120 98 GWVYSADGRPIGTKKTMVFYRGRAPAGTKTKWKMNEYRA 136 ***********************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.24E-48	3	173	IPR003441	NAC domain
PROSITE profile	PS51005	46.459	4	174	IPR003441	NAC domain
Pfam	PF02365	6.0E-23	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MGELAPGYRF YPTEEELVCF YLRHKLDGRR RGDIERVIPV ADVCSLDPWQ LPEVHRGACA 60 GDGEPWFYFC SRQEREARGG RPSRMTPSGY WKAAGTPGWV YSADGRPIGT KKTMVFYRGR 120 APAGTKTKWK MNEYRALEDD DVDAAPAAAH ATASVPNPSL QTRSEFSLCR LYTRSGCPRQ 180 FDRRPCAAAA GGGSENPVPS SSVAAASLAN EDVEVERDRK RKRCAPNDGT SCNDGGDRTV 240 QQQLTLGGTD DELVDNMTGW AEFLDWV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-29	4	180	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-29	4	180	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-29	4	180	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-29	4	180	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-29	4	180	20	174	NAC domain-containing protein 19
3swm_B	2e-29	4	180	20	174	NAC domain-containing protein 19
3swm_C	2e-29	4	180	20	174	NAC domain-containing protein 19
3swm_D	2e-29	4	180	20	174	NAC domain-containing protein 19
3swp_A	2e-29	4	180	20	174	NAC domain-containing protein 19
3swp_B	2e-29	4	180	20	174	NAC domain-containing protein 19
3swp_C	2e-29	4	180	20	174	NAC domain-containing protein 19
3swp_D	2e-29	4	180	20	174	NAC domain-containing protein 19
4dul_A	1e-29	4	180	17	171	NAC domain-containing protein 19
4dul_B	1e-29	4	180	17	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000688G0120

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP099084	0.0	FP099084.1 Phyllostachys edulis cDNA clone: bphyem111h11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158910.1	1e-124	LOW QUALITY PROTEIN: NAC domain-containing protein 90-like
Refseq	XP_020158921.1	1e-124	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	2e-66	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0D9WH20	1e-125	A0A0D9WH20_9ORYZ; Uncharacterized protein
STRING	LPERR05G14390.1	1e-126	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-65	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]