PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000670G0190
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 162aa    MW: 18382.7 Da    PI: 10.9444
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000670G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651e-2081134356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t+eq++ Le+ Fe+++++  +++ eLA++lg+  rqV vWFqNrRa++k
  PH01000670G0190  81 KKRRLTPEQVQMLERSFEEENKLEPQRKSELARRLGMAPRQVAVWFQNRRARWK 134
                      5678*************************************************9 PP
2HD-ZIP_I/II111.45.9e-3680150171
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayd 71 
                      ekkrrl+ eqv++LE+sFeee+kLep+rK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d+ +Lk+a++
  PH01000670G0190  80 EKKRRLTPEQVQMLERSFEEENKLEPQRKSELARRLGMAPRQVAVWFQNRRARWKTKQLEQDFGRLKAAVQ 150
                      69*****************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007118.23676136IPR001356Homeobox domain
SMARTSM003891.3E-1979140IPR001356Homeobox domain
SuperFamilySSF466893.21E-1980143IPR009057Homeodomain-like
CDDcd000861.02E-1581137No hitNo description
PfamPF000463.8E-1881134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-2182141IPR009057Homeodomain-like
PRINTSPR000311.4E-6107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000311.4E-6116132IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDPGRVVFDS GVARRAGPGS GGAQMLLFGG GGSANSGGFF RGVPTAVLGM DDARVSSKRP  60
FFRTHEELLE EEYYDEQAPE KKRRLTPEQV QMLERSFEEE NKLEPQRKSE LARRLGMAPR  120
QVAVWFQNRR ARWKTKQLEQ DFGRLKAAVQ RDRRRSPGSS LQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000670G0190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1014840.0FP101484.1 Phyllostachys edulis cDNA clone: bphyem203i06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235125.14e-68homeobox-leucine zipper protein HOX5
RefseqXP_015650258.14e-68homeobox-leucine zipper protein HOX5
SwissprotQ6ZA744e-69HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
SwissprotQ9XH364e-69HOX5_ORYSI; Homeobox-leucine zipper protein HOX5
TrEMBLA0A0E0LUX69e-72A0A0E0LUX6_ORYPU; Uncharacterized protein
STRINGOPUNC08G13170.11e-72(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-36homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]