PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000667G0350
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 481aa    MW: 51581.7 Da    PI: 6.267
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000667G0350genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.75.3e-28182236156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k +++WtpeLH+rFv+aveqL G++kA+P++ilelm+v++Lt+++++SHLQkYR++
  PH01000667G0350 182 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGVECLTRHNIASHLQKYRSH 236
                      5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.86179238IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-27180239IPR009057Homeodomain-like
SuperFamilySSF466893.05E-18180239IPR009057Homeodomain-like
TIGRFAMsTIGR015576.8E-27182236IPR006447Myb domain, plants
PfamPF002492.1E-7185234IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MLEVSTLRSP KADQRAVVGD HHVGFPASSA TDDDDFIVDD NLLDYIDFSC DVPFFHADGD  60
ILPDLEVDPT ELLAEFSSPD KPIPTVSPAD PAADGCGARG DAGAEAKTTE VKEGKKELIE  120
EKDEKGFLEE KDVKSNGDEV LSAVTTEDSA AVGSDTKSSA SAEGHSKRKP SSSAKNSQGK  180
RKVKVDWTPE LHRRFVQAVE QLGIDKAVPS RILELMGVEC LTRHNIASHL QKYRSHRKHL  240
MAREAEAASW TQKRPIYVAA AAGTGGQVAG GPREDVAGPW VVPTIGFPPP GMPHAVAAMV  300
QPPPPPCCRP LHVWGHPTAV EVAPPPMLPV WPRHLAPPQP LPAWAHQPPV DPAYWHQQYN  360
AARKWGPQSV TQGTPCIPPP MAPAAMLQRF PLPPMPGIFP HPMYRPLPPP QSNKLAGLQL  420
QLDAHPSKES IDAAIGDVLV KPWLPLPLGL KPPSLDSVMS ELQKQGVPKV PPAATTSGGA  480
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-15187238657Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000667G0350
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0993090.0FP099309.1 Phyllostachys edulis cDNA clone: bphyem212o08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187877.10.0probable transcription factor GLK2
SwissprotQ5NAN51e-156GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A0A9LLL40.0A0A0A9LLL4_ARUDO; Uncharacterized protein
STRINGORUFI01G09620.11e-156(Oryza rufipogon)
STRINGSi001336m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.15e-74GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]