PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000652G0840
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 353aa    MW: 38941.8 Da    PI: 6.1924
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000652G0840genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.71.5e-55231501129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdee+ ++yL++k+ +++++   vi evd++k+ePwdLp k+k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgkdke+++
  PH01000652G0840  23 LPPGFRFHPTDEEITSHYLTPKALDHRFSS-GVIGEVDLNKCEPWDLPGKAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGKDKEIFR 115
                      79*************************999.99***************99999***************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +g lvg+kktLvfy+grap+gekt Wvmhe+rle
  PH01000652G0840 116 GRGILVGMKKTLVFYRGRAPRGEKTGWVMHEFRLE 150
                      ********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-6417173IPR003441NAC domain
PROSITE profilePS5100558.923173IPR003441NAC domain
PfamPF023654.2E-2824149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSEVSVINQA EVEVEEAAAG LELPPGFRFH PTDEEITSHY LTPKALDHRF SSGVIGEVDL  60
NKCEPWDLPG KAKMGEKEWY FFCHKDRKYP TGTRTNRATE SGYWKATGKD KEIFRGRGIL  120
VGMKKTLVFY RGRAPRGEKT GWVMHEFRLE GKLPHPLPHS AKDEWAVCKV FNKDLAARNG  180
PMAAAGAGLE RVSSFGFISD FLESSELPPL MDPPFGADVD EAIDFKGPAS TSGYAAGVAG  240
AHAAPGMQQV KMEEPVPLQY NHQQQPHMLY SSPYFSLPTV NSGDRTTAIR RYCKAEHVSG  300
QTSVLSPSRE TGLSTDPNSA GCAEISSAVT PSSQPFLDHF DDHVLDLADF WKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-522117918174NAC domain-containing protein 19
3swm_B1e-522117918174NAC domain-containing protein 19
3swm_C1e-522117918174NAC domain-containing protein 19
3swm_D1e-522117918174NAC domain-containing protein 19
3swp_A1e-522117918174NAC domain-containing protein 19
3swp_B1e-522117918174NAC domain-containing protein 19
3swp_C1e-522117918174NAC domain-containing protein 19
3swp_D1e-522117918174NAC domain-containing protein 19
3ulx_A1e-52151737168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000652G0840
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0959590.0FP095959.1 Phyllostachys edulis cDNA clone: bphylf054m05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162549.10.0NAC domain-containing protein 92-like
TrEMBLA0A3B6HRS80.0A0A3B6HRS8_WHEAT; Uncharacterized protein
TrEMBLA0A446QV880.0A0A446QV88_TRITD; Uncharacterized protein
TrEMBLA0A453I6G20.0A0A453I6G2_AEGTS; Uncharacterized protein
STRINGTraes_4AS_B95A1C3A1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.15e-88NAC domain containing protein 46