PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000630G0150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ZF-HD | ||||||||
Protein Properties | Length: 267aa MW: 27625.8 Da PI: 8.0589 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 85 | 8.3e-27 | 23 | 70 | 5 | 57 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +YkeC++NhAa++Gg+a+DGCgE+mp+ ++++lkCaACgCHR+FHRr PH01000630G0150 23 KYKECMRNHAAAMGGQAFDGCGEYMPA-----SPDSLKCAACGCHRSFHRRAA 70 7*************************9.....799****************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 2.2E-24 | 23 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.4E-22 | 23 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-21 | 23 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.048 | 24 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.75E-18 | 146 | 215 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 147 | 217 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.8E-26 | 158 | 215 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MMDHLSLVPY EGGSGGGAGG CGKYKECMRN HAAAMGGQAF DGCGEYMPAS PDSLKCAACG 60 CHRSFHRRAA AAGGPGACAP VFFRPPPPPP HGTHHAALQA FLPSVPPPPP QLALPYHAVP 120 ATAWHHAVGA ARAGSETPPR PEDFAGGGSG SGSGSFGRKR SRTKFTSEQK ERMREFAEKQ 180 GWRINRNDDG ALERFCIEIG VKRHVLKVWM HNHKNHLASP NSSAAAAAAG INPSAGAGTG 240 DGDDDDTDDF PPHAAVSSPS PSPISV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-23 | 159 | 222 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000630G0150 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606626 | 1e-161 | AL606626.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088K19, complete sequence. | |||
GenBank | AL606706 | 1e-161 | AL606706.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13, complete sequence. | |||
GenBank | AP014960 | 1e-161 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181898.1 | 1e-102 | zinc-finger homeodomain protein 8-like | ||||
Swissprot | Q7X7N3 | 7e-88 | ZHD8_ORYSJ; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A3B6C7A3 | 1e-101 | A0A3B6C7A3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MDR4 | 1e-101 | A0A446MDR4_TRITD; Uncharacterized protein | ||||
STRING | BRADI5G10470.1 | 3e-92 | (Brachypodium distachyon) | ||||
STRING | OMERI04G10740.1 | 3e-92 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13649 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 3e-42 | zinc finger homeodomain 1 |