PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000621G0810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 171aa MW: 18449.1 Da PI: 9.6555 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.3 | 1.1e-10 | 93 | 155 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 eke kr rr NRe+Ar +R++ +eL++kv+ L+++N+ +kke ++ +e+ +lk + PH01000621G0810 93 EKEAKRLRRVLANRESARQTILRRQVIRDELARKVADLSSQNEHMKKEKDMVMQEYLSLKETN 155 89**********************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-5 | 91 | 158 | No hit | No description |
SMART | SM00338 | 4.3E-12 | 93 | 157 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.3E-9 | 93 | 155 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.818 | 95 | 158 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.55E-7 | 97 | 153 | No hit | No description |
CDD | cd14702 | 1.17E-10 | 98 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MALAAMAGAG PGAPAAVQMP PVQHTTAQAT AAEHEDEELA STRLSLELGK VGIRSSCCSG 60 SSSPGHPAQQ AVQVAAAAPG YGPRPRHMLT EAEKEAKRLR RVLANRESAR QTILRRQVIR 120 DELARKVADL SSQNEHMKKE KDMVMQEYLS LKETNKQLKE QAHHLSLSLL * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000621G0810 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809461.1 | 6e-63 | light-inducible protein CPRF2-like | ||||
TrEMBL | B8BJ59 | 8e-66 | B8BJ59_ORYSI; Uncharacterized protein | ||||
STRING | Pavir.Cb02058.1.p | 2e-66 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3165 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19490.1 | 2e-18 | bZIP family protein |