PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000608G0120
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 373aa    MW: 40122.2 Da    PI: 7.1068
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000608G0120genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.81.7e-16202253354
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                      ++kr rr+ +NRe+ArrsR+RK+a ++ L   v++L +eN++L k+l   ++
  PH01000608G0120 202 DVKRMRRMVSNRESARRSRKRKQAHVADLGSQVDNLRGENESLFKQLTDANQ 253
                      579***************************************9966554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.6E-16200264IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.657202254IPR004827Basic-leucine zipper domain
PfamPF001702.9E-14203252IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.09E-12203255No hitNo description
Gene3DG3DSA:1.20.5.1708.0E-13204255No hitNo description
CDDcd147025.68E-19205255No hitNo description
PROSITE patternPS000360207222IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MKNERAIRDL LVNITESISQ RLEAGAVLRD GHGALTQVEE FSLKLNGASF LVVPEQILNA  60
RSDGLSSGTR SKDDGENFLG GGGIEPGRNG AIVLCPFSVG FVARGAIDVV LEVELAGSNE  120
EKFAPQRVVR LLELKFGKER RHIGSTDGQR RGLGRISVHG GKGRKQRMVS QALGGSSGSD  180
SDSESWLDIE GGLCEQSTNP MDVKRMRRMV SNRESARRSR KRKQAHVADL GSQVDNLRGE  240
NESLFKQLTD ANQQFTTAVT DNRILKSDVE ALRIKVKLAE DMVARGALSC GLGHLGLSPA  300
LNARQVCRVP DVLAGLGFPG DDACFTGLSP TEQVQNSPMQ SMASLESLEN QMPGEVVDVW  360
GWDSHSNGGM SK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216222RRSRKRK
2216223RRSRKRKQ
3218223SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000608G0120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0916850.0FP091685.1 Phyllostachys edulis cDNA clone: bphyem117d19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315644.11e-117basic leucine zipper 9-like isoform X1
SwissprotQ6ETX01e-103RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLA0A0A9E5441e-116A0A0A9E544_ARUDO; Uncharacterized protein
STRINGSb04g005020.11e-116(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-39basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]