PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000604G0580
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 324aa    MW: 35350.7 Da    PI: 9.3618
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000604G0580genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-17108157155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PH01000604G0580 108 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAHDRAAIKFRG 157
                      78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-9108157IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-15108165IPR016177DNA-binding domain
SMARTSM003803.8E-30109171IPR001471AP2/ERF domain
PROSITE profilePS5103217.135109165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-16109165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEMEMDLNAV ETVAAVRRDD SAASSALNAA STRVEASTPP PPQQQPAALA FTILSPDGGG  60
GGTSAPQQFI TRELFPVLPP RGSSGLSKPG AEQVAKMKSR RGPRSRSSQY RGVTFYRRTG  120
RWESHIWDCG KQVYLGGFDT AHAAARAHDR AAIKFRGMGA DINFSLGDYD EDMKQMKQLT  180
KEEVVHLLRR RRQTSTAGFN SSRGSYNQYG GRWEAPRPRM GRHYFLGSTN CIYLGLLDSQ  240
VEAAREAVTN SDVPSVYHGD EITTRLDQLH TQPGVDVDLN LSISQPSRPF GFGGLHLRHG  300
AFIQTSALKR AKASIAACCD MEC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000604G0580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231883.18e-67PREDICTED: floral homeotic protein APETALA 2 isoform X2
SwissprotB8AXC34e-60AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A166CX485e-66A0A166CX48_DAUCS; Uncharacterized protein
TrEMBLA0A2K2DCG13e-65A0A2K2DCG1_BRADI; Uncharacterized protein
STRINGBRADI2G37800.19e-66(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-51related to AP2.7