PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000602G0590
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TCP
Protein Properties Length: 291aa    MW: 32226.4 Da    PI: 9.5705
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000602G0590genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP138.84.4e-43872293136
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.eaesssssasnsssg...... 88 
                      ++kdrhski+T++g+RdRR+Rls+++a+rfF+Lqd+LGfdk+skt++WLl ++ + ikel+ t+  s+ s++ ++++ +++   +s +      
  PH01000602G0590  87 ARKDRHSKICTAGGMRDRRMRLSLDVARRFFALQDKLGFDKASKTVQWLLDMSRAGIKELMMTEDGSSlSDTtKQHDVEQQIVMDSDSdrkkrp 180
                      79*************************************************************5555533332222222222222222345678 PP

              TCP  89 .kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                       ka+k aa   k+++ ++  + ++kesra+ar+rarert+e+ r+++ +
  PH01000602G0590 181 iKASKRAAAAPKKSNASSPISTIDKESRARARERARERTKERSRLRWAT 229
                      85555555555555555558999*********************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.8388146IPR017887Transcription factor TCP subgroup
PfamPF036342.2E-3888224IPR005333Transcription factor, TCP
PROSITE profilePS5137011.567205222IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSFPSSPMDI SFYQQLQLSP PASPTQGHHP AALCYYPAAY PSPPPFATDD GFHHIPEAHA  60
AVMTDYPSPS PPPPQPKADG GERVVVARKD RHSKICTAGG MRDRRMRLSL DVARRFFALQ  120
DKLGFDKASK TVQWLLDMSR AGIKELMMTE DGSSLSDTTK QHDVEQQIVM DSDSDRKKRP  180
IKASKRAAAA PKKSNASSPI STIDKESRAR ARERARERTK ERSRLRWATL ASSISIEEAP  240
PPPPPPPPSS RHLNMASQVE DVIPAFEHSS YCHQDQWELS GVVFAKAHFH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207219RARARERARERTK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000602G0590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1512658e-56AY151265.1 Psathyrostachys fragilis specimen-voucher PI 343192 TCP2 gene, partial cds.
GenBankAY1512668e-56AY151266.1 Psathyrostachys fragilis specimen-voucher PI 401392 TCP2 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796975.13e-54transcription factor TEOSINTE BRANCHED 1-like
SwissprotQ93WI23e-52TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLA0A346M1232e-70A0A346M123_CYNDA; Teosinte branched 1
STRINGPavir.Ib04362.1.p8e-61(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.14e-24TCP domain protein 12
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]
  2. Clark RM,Tavaré S,Doebley J
    Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus.
    Mol. Biol. Evol., 2005. 22(11): p. 2304-12
    [PMID:16079248]