PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000600G0330

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HB-other

Protein Properties

Length: 455aa MW: 49272.8 Da PI: 8.8452

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000600G0330	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.9	2e-14	21	73	3	51
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNr 51 k ++t+eq+e+Le++++++++ps ++r+ L +++ +++ r++kvWFqNr PH01000600G0330 21 KYVRYTSEQVEVLERVYAECPKPSSTRRQLLLRECpilaNIEPRKIKVWFQNR 73 5678************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-13	5	73	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.098	16	73	IPR001356	Homeobox domain
SMART	SM00389	1.5E-5	18	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.92E-11	19	73	IPR009057	Homeodomain-like
CDD	cd00086	2.82E-12	21	73	No hit	No description
Pfam	PF00046	4.0E-12	22	73	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MVAMRSGSDS GYDKARMDSG KYVRYTSEQV EVLERVYAEC PKPSSTRRQL LLRECPILAN 60 IEPRKIKVWF QNRSLPQYAA WKCNGSRRNC VGNGSQQMWV LKVSSCYYED MLLMEENERL 120 QRQVSHLVHE SAYMKQHLQN PSLANDTSCE SDVTTPQNPL KDATNPSGLL SIEEETLTEF 180 LSKAIRTAVD WVQMPGMKSK VQPLNSSSSP LIFRCCCPGG SNLHSSGWPL LAAAAASPNS 240 RHLPPSHGKP PSPAGFTAGG RHYSELRATP PHPNLPSPLP LPLLHLDLSS SPEAAPPCPD 300 LVSPPTPLRH PGPRPRPPPF RSALDQAAAT SALLRASQGP KLEIQEGGDS VGGRREKGAA 360 SNGGFRGVTS MKGGYDTDAT STTGSTLPEP LELLCSSSQL RLPQIRSDPG LSVITTLTSC 420 SPPLRIRCQP PRAASPSSCS RGPPWYRRER GGGD*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MVAMRSGSDS GYDKARMDSG KYVRYTSEQV EVLERVYAEC PKPSSTRRQL LLRECPILAN  60
IEPRKIKVWF QNRSLPQYAA WKCNGSRRNC VGNGSQQMWV LKVSSCYYED MLLMEENERL  120
QRQVSHLVHE SAYMKQHLQN PSLANDTSCE SDVTTPQNPL KDATNPSGLL SIEEETLTEF  180
LSKAIRTAVD WVQMPGMKSK VQPLNSSSSP LIFRCCCPGG SNLHSSGWPL LAAAAASPNS  240
RHLPPSHGKP PSPAGFTAGG RHYSELRATP PHPNLPSPLP LPLLHLDLSS SPEAAPPCPD  300
LVSPPTPLRH PGPRPRPPPF RSALDQAAAT SALLRASQGP KLEIQEGGDS VGGRREKGAA  360
SNGGFRGVTS MKGGYDTDAT STTGSTLPEP LELLCSSSQL RLPQIRSDPG LSVITTLTSC  420
SPPLRIRCQP PRAASPSSCS RGPPWYRRER GGGD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000600G0330

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP091658	9e-72	FP091658.1 Phyllostachys edulis cDNA clone: bphylf003n22, full insert sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60690.1	1e-61	HD-ZIP family protein