PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000597G0530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | AP2 | ||||||||
Protein Properties | Length: 470aa MW: 50546.9 Da PI: 6.4609 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.9 | 3.7e-11 | 133 | 189 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g + +e+Aa+a++ a++k++g PH01000597G0530 133 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQGG-YAKEEKAARAYDLAALKYWG 189 57*******************5544.235444777766.5555**************98 PP | |||||||
2 | AP2 | 48.2 | 2.7e-15 | 232 | 283 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g PH01000597G0530 232 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 283 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.14E-14 | 133 | 198 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.97E-17 | 133 | 199 | No hit | No description |
Pfam | PF00847 | 1.9E-8 | 133 | 189 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.201 | 134 | 197 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-12 | 134 | 198 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-21 | 134 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-6 | 135 | 146 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-10 | 232 | 283 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.25E-24 | 232 | 292 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-18 | 232 | 292 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-18 | 233 | 291 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.348 | 233 | 291 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-33 | 233 | 297 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-6 | 273 | 293 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MDMDASHHYP WLNFSLAHHC DMEEEERGAV AELAAIAGAA PPPKLEDFLG CGGGNGGNGG 60 APISGTTTEA SATELYDSEL KFLAAGFLSG AAGTAPTPTA PLEQADAKLA LPAPAAQAPE 120 QKKAVDSFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQGGY AKEEKAARAY 180 DLAALKYWGP STTTNFPVAE YEKELEEMKH MTRQEFVASL RRKSSGFSRG ASIYRGVTRH 240 HQHGRWQARI GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EIGRYNVESI 300 INSNLPIGSM SGNRSSKALE STPSSSSDAI PVEAAGHTST APSSLAFTAL PMKYDQDYLT 360 FLALQHHQQG NLQGLGFGFC SSGVNLDFAN VNGAGAMAHC YTNGALHEQH QQHQQQGQQD 420 QPQSSNSCSS IPFATPIAFS GSYESSITPS PFGYYPNVAA FQTPIFGIE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000597G0530 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101430 | 0.0 | FP101430.1 Phyllostachys edulis cDNA clone: bphyst021o19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633701.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 isoform X2 | ||||
Swissprot | Q6PQQ3 | 1e-128 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A0D9ZRR6 | 0.0 | A0A0D9ZRR6_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM04G27700.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-115 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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