PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000573G0670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 21360.1 Da PI: 9.627 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.6e-20 | 24 | 74 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 + +GVr ++ +gr++AeIrd + r +r++lg+f+taeeAa+a++aa+++++g+ PH01000573G0670 24 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTAEEAARAYDAAARRIRGH 74 679******.**********44.....55**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.6E-14 | 23 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.39E-14 | 23 | 83 | No hit | No description |
SMART | SM00380 | 4.6E-32 | 24 | 87 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.472 | 24 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 24 | 82 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-10 | 25 | 36 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-30 | 26 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MAPKNQSPAD AAGNGGGGRE MEPRLRGVRK RPWGRYAAEI RDPVRKARVW LGTFDTAEEA 60 ARAYDAAARR IRGHAARTNF PADQACAAPP SKEAASASGS TVESSSSSRD SPAMAPASLG 120 LRLGMPAMVA AQPYLFVDPR LVVTVAVPAP APFVPPSSRH EAAVATKKAW EDAQSDTSSS 180 SLVDAAPAVG VGFDLNLPPP AEMVM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-21 | 24 | 83 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000573G0670 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093338 | 0.0 | FP093338.1 Phyllostachys edulis cDNA clone: bphylf037b19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823499.1 | 2e-54 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A1E5UZX7 | 2e-56 | A0A1E5UZX7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb00545.1.p | 3e-53 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11853 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 4e-18 | ethylene response factor 7 |