PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000551G0750
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 439aa    MW: 49564.1 Da    PI: 6.648
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000551G0750genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.23.5e-26114210186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a+++ +++ ++++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ t++++ +  ++d
  PH01000551G0750 114 KWTDSMVKLLITAVSYAGDDPGADSgggkrnctmmQKKGKWKAISKVMGERGCNVSPQQCEDKFNDLNKRYKRLTDILGRGtTCKVVANPGLLD 207
                      7*********************9877777888999**********************************************77******99999 PP

         trihelix  84 qle 86 
                      +++
  PH01000551G0750 208 RMD 210
                      998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.1E-21112236No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEGNNLPSGN LMQGTPYGSL DLHCNPMQMH APNSANEGFS HSQMPGNFSM PMNQVTDSDH  60
LSEFQFAEHG KTNHHHHHHT KKCMSDDEEH GANEDATDSQ SGKGKKGSGW QRMKWTDSMV  120
KLLITAVSYA GDDPGADSGG GKRNCTMMQK KGKWKAISKV MGERGCNVSP QQCEDKFNDL  180
NKRYKRLTDI LGRGTTCKVV ANPGLLDRMD NLSEKLKEDA RKILNSKHLF YEEMCSYHNN  240
NRVNLPEDHA LQRSLQLALR CKEENDPRRG ASGDADEDDQ SADTDYEEEN DEEHHTMHGN  300
KGTLPIHKRI RYMVGNEDVG FGNSSSSHDC SRRSDPHGVT LDINKVLPDG TNLALAQKDL  360
ATQSAELEKH RLQIEVQALE LAKQRLKWEQ FSKKKDRELE RMSLENEQMK IENKRLELEV  420
RHKELELELK LKGNGNHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000551G0750
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703139.10.0uncharacterized protein LOC101777650
RefseqXP_012703140.10.0uncharacterized protein LOC101777650
RefseqXP_022684365.10.0uncharacterized protein LOC101777650
TrEMBLA0A0A9QSA20.0A0A0A9QSA2_ARUDO; Uncharacterized protein
STRINGSi010104m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-94sequence-specific DNA binding transcription factors