PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000551G0600
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 472aa    MW: 52354.2 Da    PI: 4.5347
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000551G0600genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS201.54.9e-62964553373
             GRAS   3 elLlecAeavssgdlelaqalLarlsel......aspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                      +lLl  A+av+ +dl +a+++++rl +l      +s   d    ++  la yf+++L++++++  +     ++p++ +    s++l a+++++e
  PH01000551G0600  96 DLLLVGAKAVEYRDLIQASTIMSRLDDLlpdtacRSY--DavvsSFDHLAYYFARGLRSQISGART----ECQPTAPP---ASNRLPAYQMLQE 180
                      689999********************99665433333..255559******************222....23333333...78899******** PP

             GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                      +sP++kf+h+t+NqaIlea+  +  vH++Df+++ G+QW +L+  La  ++   s+ +T++        ++ +  ++ L++fAe+l++pf+++ 
  PH01000551G0600 181 LSPFFKFAHFTTNQAILEATMDDPDVHVVDFNVGDGVQWSSLMSDLARHSS--KSFHLTALTT------DTDSDAARWLSEFAESLNLPFRYSS 266
                      ***********************************************9755..59999***99......445567789**************** PP

             GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe......adh.nsesFlerflealeyysal 267
                      l++++ edl  +e+  + + ++++++       l    sl++ +  +L  vk l+Pk+v+++e+e      +++  ++sF+e f+eal++++a+
  PH01000551G0600 267 LHVHSEEDL--HEFTKSCKGSVIISCDTTNRPYL----SLNKLQMLLLGSVKILQPKLVILIEEElfqigrISClAAASFAEFFCEALHHFTAV 354
                      977755555..888888899******99777776....78887889*******************7666554444677**************** PP

             GRAS 268 fdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                      ++sl++ +   s     + vE+e+lg++i++ v + g++      t ++ +++    GF++ +ls+++ +qak+l+  ++ +g+ v +e+g l 
  PH01000551G0600 355 LESLASCFCGGSyeVCLRLVEKEMLGPRIEDSVGQYGSM------TGGTSSAAGYFEGFRACELSSFNIAQAKMLVGLFS-RGFGVVHEKGRLA 441
                      ****999999986566789*******************9......344444555567***********************.************* PP

             GRAS 360 lgWkdrpLvsvSaW 373
                      l+Wk+rpL+svS+W
  PH01000551G0600 442 LCWKSRPLTSVSVW 455
                      ************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.95368437IPR005202Transcription factor GRAS
PfamPF035141.7E-5996455IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MSYTCPPITP FPTQHEESSN LLWSPQVVVP HENVSMFDGD PSPDQQQDHE FLDIMVQEAN  60
DLIQDDFFHV DPLTGFDEIG NSLAVQEECM ENTLGDLLLV GAKAVEYRDL IQASTIMSRL  120
DDLLPDTACR SYDAVVSSFD HLAYYFARGL RSQISGARTE CQPTAPPASN RLPAYQMLQE  180
LSPFFKFAHF TTNQAILEAT MDDPDVHVVD FNVGDGVQWS SLMSDLARHS SKSFHLTALT  240
TDTDSDAARW LSEFAESLNL PFRYSSLHVH SEEDLHEFTK SCKGSVIISC DTTNRPYLSL  300
NKLQMLLLGS VKILQPKLVI LIEEELFQIG RISCLAAASF AEFFCEALHH FTAVLESLAS  360
CFCGGSYEVC LRLVEKEMLG PRIEDSVGQY GSMTGGTSSA AGYFEGFRAC ELSSFNIAQA  420
KMLVGLFSRG FGVVHEKGRL ALCWKSRPLT SVSVWSPVWK RGEPCCSYFP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2817445798380Protein SCARECROW
5b3h_A3e-2817445797379Protein SCARECROW
5b3h_D3e-2817445797379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000551G0600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809511.10.0nodulation-signaling pathway 2 protein-like isoform X2
TrEMBLA0A3L6R6F60.0A0A3L6R6F6_PANMI; Nodulation-signaling pathway 2 protein-like
STRINGPavir.Ca00212.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-27GRAS family protein