PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000542G0130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | G2-like | ||||||||
Protein Properties | Length: 260aa MW: 28287.5 Da PI: 7.0184 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.8 | 1.2e-33 | 41 | 95 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpe He+Fv+av+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+ PH01000542G0130 41 KQRMRWTPEHHECFVDAVNQLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYRT 95 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.022 | 38 | 98 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-32 | 39 | 97 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.94E-18 | 40 | 95 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-25 | 41 | 95 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.2E-9 | 43 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.2E-26 | 124 | 171 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSMVQPSNLT ASQPAISQSA SSHSGEICPV ASPPSNASAA KQRMRWTPEH HECFVDAVNQ 60 LGGSEKATPK GVLKLMKVDG LTIYHVKSHL QKYRTARYKP DLSEGSTEKM SSTDELSLDL 120 KTSMDLTEAL RLQMEVQKRL HEQLEIQRKL QLRIEEQGKY LQMMFEKQCK SSTEKVQDPS 180 SADTAAPSSD PSHSASKDTD AALDPHRTGD NPGTAELGPN STPVGGNQKT SETESSDSLA 240 TANDGSKLPQ EKRRRVHSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-29 | 40 | 99 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 251 | 255 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q10LZ1}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000542G0130 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF831533 | 1e-156 | JF831533.1 Zea mays isolate A phosphate starvation protein (PHR1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794590.1 | 1e-145 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Refseq | XP_025794591.1 | 1e-145 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Swissprot | B8ANX9 | 1e-138 | PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1 | ||||
TrEMBL | A0A2T7CD29 | 1e-144 | A0A2T7CD29_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03429.1.p | 1e-141 | (Panicum virgatum) | ||||
STRING | Pavir.J39104.1.p | 1e-142 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1971 | 37 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.3 | 2e-65 | G2-like family protein |