PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000542G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | G2-like | ||||||||
Protein Properties | Length: 237aa MW: 26040.3 Da PI: 7.1959 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.3 | 4.7e-30 | 39 | 89 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r+rWtpe He+Fv+av+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQ PH01000542G0010 39 KQRMRWTPEHHECFVDAVNQLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQ 89 79************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.795 | 36 | 96 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-28 | 37 | 90 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.68E-16 | 38 | 93 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-22 | 39 | 90 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.6E-8 | 41 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.2E-26 | 109 | 156 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MVQPSNLTAS QPAISQSASS HSGEICPVAS PPSNASAAKQ RMRWTPEHHE CFVDAVNQLG 60 GSEKATPKGV LKLMKVDGLT IYHVKSHLQV QQKKMSSTDE LSLDLKTSMD LTEALRLQME 120 VQKRLHEQLE IQRKLQLRIE EQGKYLQMMF EKQCKSSTEK VQDPSSVDTA APSSDPSHSA 180 SKDSDAALDP NRTGDNPGIA ELGPNSTPVG GNQKTSDYGL QTYKQYYMIR LRITDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-24 | 38 | 89 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-24 | 38 | 89 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-24 | 38 | 89 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-24 | 38 | 89 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-24 | 38 | 89 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-24 | 38 | 89 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-24 | 38 | 89 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-24 | 38 | 89 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q10LZ1}. | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:18263782, PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:26082401}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000542G0010 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by Pi starvation. {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:26082401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF831533 | 3e-67 | JF831533.1 Zea mays isolate A phosphate starvation protein (PHR1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794590.1 | 1e-120 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Refseq | XP_025794591.1 | 1e-120 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Swissprot | B8ANX9 | 1e-107 | PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1 | ||||
Swissprot | Q10LZ1 | 1e-107 | PHR1_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 1 | ||||
TrEMBL | A0A2T7CD29 | 1e-119 | A0A2T7CD29_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03429.1.p | 1e-117 | (Panicum virgatum) | ||||
STRING | Pavir.J39104.1.p | 1e-118 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1971 | 37 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.3 | 4e-55 | G2-like family protein |
Publications ? help Back to Top | |||
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