PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000534G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 358aa    MW: 35806.9 Da    PI: 6.8626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000534G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-11174219555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+e++P+a      K +Ka++L + ++Y+k Lq
  PH01000534G0360 174 HSIAERLRRERIAERMRALQEVVPNA-----NKTDKASMLDEIIDYVKFLQ 219
                      99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-15167221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.78E-12167221No hitNo description
PROSITE profilePS5088816.964169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-14171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-8174219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAAAAAGNAQ ISLDDLRNGH AGGGGVHDDF LDHMLSSLPP SAWPDLAAAA AAGKATEDGA  60
QAEGLQQQFG GPYDESALLA SRLRQHQISG GGPGGGAASA KQMGAGSFQQ QQHFQPHPQQ  120
QTAPMPSQTF GGGGASGGAA QPQAGTAGGG GGGGAPAPPR QRVRARRGQA TDPHSIAERL  180
RRERIAERMR ALQEVVPNAN KTDKASMLDE IIDYVKFLQL QGRGGGASGG GPTSAAGSDS  240
LTVTEQQVAK LMEEDMGSAM QYLQGKGLCL MPISLASAIS STTCHIRPPV GAAAGPIPAA  300
LGAAVHHLNA AMRLPGDMNA ADGAVPASPS MSVLTAQSAM ANGEGSQPKD AASVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000534G0360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057841e-64AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10.
GenBankAP0149651e-64AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325140.21e-94transcription factor bHLH66
TrEMBLB8BF901e-103B8BF90_ORYSI; Uncharacterized protein
STRINGevm.TU.contig_30708.12e-95(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-37LJRHL1-like 1