PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000531G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 353aa    MW: 39569 Da    PI: 5.1512
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000531G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.81.9e-1811103198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk++      + + l+lp kfa+e ++ + ++ +l++  e+ r W+vk+ +++ ++  +l +GW++F++a++L++g f+vF++dg+  f  +v
  PH01000531G0070  11 FFKIM--LPGVTPKKLRLPDKFARELKYRELRDAKLQVAGEEQRLWDVKVVVDGDGD-AYLDRGWQQFARAHDLQVGHFLVFRFDGTAVF--TV 99 
                      77777..55666667***********99999*******************7777765.579**********************9998888..99 PP

                      EEE- CS
               B3  95 kvfr 98 
                      +vf+
  PH01000531G0070 100 TVFD 103
                      9887 PP
2B341.72e-131462271190
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                       +++ l +p +f ++hg+++ +    ++ +    +W v+l++     ++++r++++ GW +F+ +ngL +gD++ F++ ++ +++
  PH01000531G0070 146 KQNQYLNVPVEFQDAHGYVSMR---RVVLTMGRTRWPVRLKHgsraGGRGNRTTFRYGWHKFCVDNGLGVGDTCFFRVLREgDGR 227
                      56678999********999554...4556667799*****998765555566*************************88774444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.9449105IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-209107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-189103No hitNo description
Gene3DG3DSA:2.40.330.101.6E-2110107IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-1311105IPR003340B3 DNA binding domain
PfamPF023622.4E-1511103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-20131229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-15132229IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0047134234IPR003340B3 DNA binding domain
CDDcd100173.20E-10134232No hitNo description
PROSITE profilePS5086310.771136234IPR003340B3 DNA binding domain
PfamPF023621.4E-10147226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MANLNLNDFE FFKIMLPGVT PKKLRLPDKF ARELKYRELR DAKLQVAGEE QRLWDVKVVV  60
DGDGDAYLDR GWQQFARAHD LQVGHFLVFR FDGTAVFTVT VFDDSTCRRH YQHEDAAGSG  120
SGTATIDIEA PSQFTVTLRQ CNLREKQNQY LNVPVEFQDA HGYVSMRRVV LTMGRTRWPV  180
RLKHGSRAGG RGNRTTFRYG WHKFCVDNGL GVGDTCFFRV LREGDGRVLK VEGGVMVSDG  240
LPVMSFMDHD KQTSRFDADV HDDSCTSFEA QQVGVVDGTP DFAEDHYGDD SFGGVAQHGY  300
FGSHCDLKAW EIGFTSGRED EFLSANNVIE EVFGKGCCEN ENDTASGQDD II*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000531G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628624.16e-91B3 domain-containing protein Os03g0212300
SwissprotQ10Q265e-92Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A0E0KAF52e-92A0A0E0KAF5_ORYPU; Uncharacterized protein
STRINGORGLA03G0078800.18e-91(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.17e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]