PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000511G0500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 187aa MW: 20182.5 Da PI: 7.9037 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.9 | 1.2e-14 | 121 | 172 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r + ++kNRe+A rsR+RK+a + eLe++v+ L++eN++L+ + e+ ++ PH01000511G0500 121 RRKKCMIKNRESAARSRARKQAHVSELEREVQYLQQENEKLRVKYEQVIETR 172 788899************************************9988876665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.4E-10 | 117 | 183 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.507 | 119 | 168 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.2E-13 | 121 | 173 | No hit | No description |
CDD | cd14707 | 9.04E-18 | 121 | 167 | No hit | No description |
Pfam | PF00170 | 6.1E-13 | 121 | 169 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.25E-12 | 121 | 172 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 124 | 139 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MEDEEDMWAN TTNPSALPTA ASTCSSISTA LNLNSTHLHL YSGASPPHSR DNNYNGSMGC 60 AGYRNAVASP ASFFSSAGSY PHIAPLDAGL ARRALEREMC LGHAAAPWAG AGAAAAGGGD 120 RRKKCMIKNR ESAARSRARK QAHVSELERE VQYLQQENEK LRVKYEQVIE TRCSVNLLAM 180 YSPPPND |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000511G0500 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP099554 | 0.0 | FP099554.1 Phyllostachys edulis cDNA clone: bphylf046e04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957504.1 | 5e-50 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 | ||||
TrEMBL | A0A0K2QPS3 | 2e-95 | A0A0K2QPS3_9POAL; FD-like protein | ||||
STRING | Si031077m | 2e-49 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9764 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17770.2 | 1e-14 | basic region/leucine zipper motif 27 |