PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000480G0720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bZIP | ||||||||
Protein Properties | Length: 253aa MW: 26953.6 Da PI: 5.3307 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.3 | 5e-11 | 142 | 181 | 3 | 42 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 ++kr +r NR +A+rsR RK+++i eLe+ v +L++e PH01000480G0720 142 DSKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEV 181 689**********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.9E-13 | 140 | 204 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.795 | 142 | 194 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-9 | 143 | 189 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.1E-13 | 144 | 198 | No hit | No description |
SuperFamily | SSF57959 | 7.74E-12 | 144 | 198 | No hit | No description |
CDD | cd14703 | 1.35E-25 | 145 | 196 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 147 | 162 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MATGGHRWPG GGGIVADHGH HHGGAAAWAE EFAEFAASRR GAHRRSLSDS VAFVEVAPVD 60 CGGEFDRLDD DQLMSMFPDE GGGGSAPGSE NGSSDSDGDK HGAAAGATSC KDRYDDEQNE 120 AAPQDQPAPG QASAASSELI QDSKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTTLQNE 180 VSVLSPRVAF LDQQRTILTV GNSHLKQRIA ALAQDKIFKD GEQFIDQNNL GCLSFPNPNL 240 LGFVSCYILT SS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000480G0720 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108553 | 1e-105 | AK108553.1 Oryza sativa Japonica Group cDNA clone:002-144-E08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969997.1 | 1e-101 | basic leucine zipper 6 | ||||
Swissprot | Q5JMK6 | 5e-86 | BZP06_ORYSJ; Basic leucine zipper 6 | ||||
TrEMBL | A0A0A9PQJ5 | 1e-102 | A0A0A9PQJ5_ARUDO; Uncharacterized protein | ||||
STRING | Si002546m | 1e-101 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1322 | 38 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 7e-41 | bZIP family protein |
Publications ? help Back to Top | |||
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