PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000450G0760

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 291aa MW: 31283.1 Da PI: 5.9792

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000450G0760	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.8	1.8e-16	125	177	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 e kr rr+ +NRe+ArrsR+RK+a+++ Le v++L++eN++L k+l e +++ PH01000450G0760 125 ETKRIRRMVSNRESARRSRRRKQAQLADLELQVEQLKGENTSLFKQLTEANQQ 177 679****************************************9777766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.1E-17	123	187	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.174	125	177	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-14	125	177	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.79E-12	127	179	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-12	127	178	No hit	No description
PROSITE pattern	PS00036	0	130	145	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MMKKCASELE LEAFIQEDAA DAERKQHGHG ADAGAFSPGD LSGLGFGDSN TMGGSSASHL 60 WWPESVRTPH PAVSTTVVSQ TASISASPRA TASAKHATDS ESDSDIESLI DVEAVQCKRG 120 TKSMETKRIR RMVSNRESAR RSRRRKQAQL ADLELQVEQL KGENTSLFKQ LTEANQQFTT 180 AVTDNRILKS DVEALRVKVK MAEDMVARSA MSCGLGHLEL APFLNSSKMC QALNMLSVTG 240 SDLPGDDACS KGLTPARQVQ NSLVQSTASL ECLDNRMSSE VTSCAADMWP *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	146	RRSRRRKQ
2	141	146	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000450G0760

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100558	0.0	FP100558.1 Phyllostachys edulis cDNA clone: bphyem211f06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965642.1	1e-122	bZIP transcription factor RISBZ5
Swissprot	Q654B3	1e-108	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	A0A2I4PHS1	1e-132	A0A2I4PHS1_BAMEM; Transcription factor bZIP6
STRING	Si007043m	1e-122	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	2e-31	basic leucine zipper 9

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]