PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000436G0190

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 548aa MW: 57931.4 Da PI: 7.9278

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000436G0190	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.6	6.3e-14	95	157	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+e kr r+ +NRe+A sR+RK++++eeLe kvk+++a +L +++ + e a+lk+++ PH01000436G0190 95 EEEAKRRARLVRNRESAHLSRERKRQYVEELEGKVKAMQATIADLTARISCFTAENAALKQQL 157 7899********************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.0E-15	88	157	No hit	No description
Pfam	PF00170	3.3E-12	95	157	IPR004827	Basic-leucine zipper domain
SMART	SM00338	6.7E-13	95	159	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.117	97	157	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.88E-12	99	157	No hit	No description
CDD	cd14704	4.69E-20	100	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MASAREGSLS GRLAGDLRDF DLDDLDLDFD LDLFSTDVQF PPPLATSSSS AGSPDGGSSS 60 SGAGGDGSLR NEESSESSSR GASAGSNSKP KGGDEEEAKR RARLVRNRES AHLSRERKRQ 120 YVEELEGKVK AMQATIADLT ARISCFTAEN AALKQQLGGA GGRGAPPPLP MYPAVYPLPP 180 PWIHPAYAMR GSQVPLVPIP RLKTQRSAPT VVEPPAKKAR KTKKVASVSL LGLLFLVMVC 240 GCLVPAVNRM YGAVDPGEGA AFGPPHHGRV LAVEGPQNSA SDGIDSKVPQ DGSETLPALL 300 YLPRNGKHVK INGNLVIKSI VASEKASLRM SNYSGKSSGS QGKEETSLAI PGYAASLEPG 360 EVMESAKGMK KELMALAPGD GSVYREEDGM LPQWFSEAMS GPMLSSGTCT EVFHFDLSPT 420 SAHANGIVPV YSNAMSNSSQ NFTENLPSGP AQKVKNRRIL YSEAIPLQGS TSNDTEHLKA 480 TPKNESYASS KPVSSVVVSV LADPREDGEG RISPKSLSRI FVVVLVDSVK YVTYSCVLPF 540 KNHSPHL*

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MASAREGSLS GRLAGDLRDF DLDDLDLDFD LDLFSTDVQF PPPLATSSSS AGSPDGGSSS  60
SGAGGDGSLR NEESSESSSR GASAGSNSKP KGGDEEEAKR RARLVRNRES AHLSRERKRQ  120
YVEELEGKVK AMQATIADLT ARISCFTAEN AALKQQLGGA GGRGAPPPLP MYPAVYPLPP  180
PWIHPAYAMR GSQVPLVPIP RLKTQRSAPT VVEPPAKKAR KTKKVASVSL LGLLFLVMVC  240
GCLVPAVNRM YGAVDPGEGA AFGPPHHGRV LAVEGPQNSA SDGIDSKVPQ DGSETLPALL  300
YLPRNGKHVK INGNLVIKSI VASEKASLRM SNYSGKSSGS QGKEETSLAI PGYAASLEPG  360
EVMESAKGMK KELMALAPGD GSVYREEDGM LPQWFSEAMS GPMLSSGTCT EVFHFDLSPT  420
SAHANGIVPV YSNAMSNSSQ NFTENLPSGP AQKVKNRRIL YSEAIPLQGS TSNDTEHLKA  480
TPKNESYASS KPVSSVVVSV LADPREDGEG RISPKSLSRI FVVVLVDSVK YVTYSCVLPF  540
KNHSPHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000436G0190

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800125.1	0.0	bZIP transcription factor 60-like
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	A0A0E0LP01	0.0	A0A0E0LP01_ORYPU; Uncharacterized protein
STRING	OPUNC07G22690.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	7e-73	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]