PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000415G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 293aa MW: 31593.9 Da PI: 7.919 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd+++ G g+W++ ++ g++R++k+c++rw +yl PH01000415G0010 14 KGPWTPEEDKLLVDYIQANGHGSWRLLPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50 | 7.1e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +v+++ G++ W+ Ia+ ++ gRt++++k++w+++l PH01000415G0010 67 RGPFTPEEQKSIVQLHGIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-24 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.259 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.68E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.86E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.912 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.80E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MGRAPCCDKK GLKKGPWTPE EDKLLVDYIQ ANGHGSWRLL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGPF TPEEQKSIVQ LHGIVGNKWS MIAAQLPGRT DNEIKNYWNT HLKKQLRRMG 120 LDEPPPGPAA GCPAARHMAQ WETARLEAEA RLSLLSSSGT AATASASSSS TAVPVAAAAA 180 EHATPVDFFL RLWNSDIGNS FRKVAAAAGS SLPMAVKKDA VKQEAVLPGD DSSAASNEME 240 AADQAVDEYQ MFLDFAGEEL GLFHGRHGGF SLFPPIDVLA EASLDTAFLR PS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00114 | ampDAP | Transfer from AT3G61250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000415G0010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108621 | 0.0 | AK108621.1 Oryza sativa Japonica Group cDNA clone:002-147-D04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168349.1 | 1e-163 | transcription factor MYB6 | ||||
Swissprot | Q9M2D9 | 4e-92 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | A0A3B6PPJ1 | 1e-163 | A0A3B6PPJ1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446WFJ5 | 1e-163 | A0A446WFJ5_TRITD; Uncharacterized protein | ||||
STRING | EMT27766 | 1e-163 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5409 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 7e-82 | myb domain protein 17 |