PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000405G0640
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 456aa    MW: 46024 Da    PI: 7.1986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000405G0640genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.1e-072522921055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + RR+ri +++  L+el P+a      K +Ka+ L + ++Y+k Lq
  PH01000405G0640 252 QLRRERIAERMKALQELAPNA-----NKADKASLLDEIIDYVKFLQ 292
                      67******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.1E-10237299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.754242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-6248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-10252302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.05E-7254295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MAAAAAQISL DDLRNGHAGA ANAAAGVHDD FLDQMLSSLP PSAWPDLAAA AAKATEDGAQ  60
AGLQQHQQFG GPYDESALLA SRLRQHQISG GAAAAKHMVL QQLADLRQGH HMMLQGMDRS  120
PAVGGGGGDG LLLPLTLGNG GSGGDVQALL KAAANSAGGE GGVYGGFAGS LQQQQHFQPH  180
PQQTAPMPSQ TFGGGGASGG AAQPQARAAS GGGAPPRQRV RARRGQATDP HSIAERLFFL  240
IPKCFKIIDV SQLRRERIAE RMKALQELAP NANKADKASL LDEIIDYVKF LQLQVLSMSR  300
LGGAAAVAPL VADMSSEGRV GGGPAAAAGS DSLTVTEQQV AKLMEENMGS AMQYLQGKGL  360
CLMPISLASA ISSATCHLRP PVAAAAGPMP AALGPATHHL NAAMRQLPGG MNAADGAVPV  420
SPSMSVLTAQ SAMANGGAAD ADGSQPKDAA SVSKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000405G0640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126172e-66CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146638.11e-162transcription factor bHLH66-like isoform X2
TrEMBLA0A446UAY91e-160A0A446UAY9_TRITD; Uncharacterized protein
STRINGTraes_5BL_B820523A7.21e-161(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.14e-58LJRHL1-like 1