PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000374G0780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 510aa MW: 56256.1 Da PI: 8.122 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60 | 5.2e-19 | 24 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++d+vk++G W+ Iar + gR +kqc++rw+++l PH01000374G0780 24 KGPWTQEEDDKIIDLVKKYGATKWSVIARSLS-GRIGKQCRERWHNHL 70 79******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 58.3 | 1.8e-18 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT+eE+ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++ PH01000374G0780 76 KDAWTAEEERALINAHQIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 119 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-8 | 3 | 28 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 30.432 | 19 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.09E-32 | 21 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-17 | 23 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-17 | 24 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-15 | 26 | 70 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-26 | 29 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.494 | 75 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-18 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 76 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.42E-15 | 78 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-24 | 78 | 125 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence Send to blast |
MANRKTEVQC LHRWQKVLNP ELIKGPWTQE EDDKIIDLVK KYGATKWSVI ARSLSGRIGK 60 QCRERWHNHL NPEIRKDAWT AEEERALINA HQIYGNKWAE IAKVLPGRTD NSIKNHWNSS 120 LRKKLDIYRT SNVLAVPKLL GHDDFKDKPK QMATEGHLDL SKVSSISSKD LPEITHRSSF 180 SPLRQAHKLE HAKDCSGFLL PTAQPLTSYE VSSIVDSSAV TLAVQGLESD SVRHKGLEID 240 SAHEKGLEVN STPDPVESSG TIQLEAAPSK GEPASPLKNE AHSTLGPLWY QIPNMEATPT 300 SSSLFPEHHT VHQTSEHCRD GILPPIGCTT PSPTNGKISS QLSVDSILKS AANSFPSTPS 360 ILRRRKRDKS TPASASELKS GVNTDSFYTP MGKEPTTDTP ESFKTASFLS LGSLDGLSSS 420 VRSFDVSPPY RTRSKRMAVT KTVEKQLDFS SDGLDTCGSE ILNSPCQNSQ STNSITEAPR 480 MKEKGHNEHV FQLETLTKNF AHTTNLDVT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 6e-61 | 5 | 125 | 39 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-61 | 5 | 125 | 39 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 363 | 368 | RRKRDK |
2 | 430 | 435 | RTRSKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000374G0780 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616493.1 | 0.0 | transcription factor MYB3R-2 | ||||
Refseq | XP_015616500.1 | 0.0 | transcription factor MYB3R-2 | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A0D9YH51 | 0.0 | A0A0D9YH51_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G40780.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 2e-88 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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