PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000343G0330
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 285aa    MW: 29869.5 Da    PI: 6.5225
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000343G0330genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19136186255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp + g  +r++lg+f+tae+Aa a+++a+ +++g
  PH01000343G0330 136 HYRGVRQRP-WGKFAAEIRDPAKHG--ARVWLGTFDTAEDAAMAYDRAAYRMRG 186
                      8********.**********96654..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-32135194IPR001471AP2/ERF domain
CDDcd000187.87E-31135194No hitNo description
PROSITE profilePS5103224.289136194IPR001471AP2/ERF domain
PfamPF008471.2E-13136186IPR001471AP2/ERF domain
SMARTSM003802.0E-38136200IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-23136196IPR016177DNA-binding domain
PRINTSPR003673.7E-11137148IPR001471AP2/ERF domain
PRINTSPR003673.7E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MLLNPVSGAA ALDSIRHHLL EEPAASVAPR PVYCRSTSFG SLVADQWSES LPFRPNDADD  60
MVVYGALRDA FSLGWLPDGS FAAVKPEPLP SPDSYDGSCL GSFLAPSEPE TPGEVGSTTP  120
AREEAEAAAA ASRGKHYRGV RQRPWGKFAA EIRDPAKHGA RVWLGTFDTA EDAAMAYDRA  180
AYRMRGSRAL LNFPLRIGSE IAAAAAAAGT AVGDKRPCPE PASSDSSSPS SSSSSGSPKR  240
RKRGEAAAAS MAMALVPPLP TQAPIQLTLP AQPWFAAGPV QQLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-38132199168ATERF1
3gcc_A1e-38132199168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000343G0330
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0938980.0FP093898.1 Phyllostachys edulis cDNA clone: bphyem121f18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570010.11e-128ethylene-responsive transcription factor 1
SwissprotO803371e-55EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A287UE741e-133A0A287UE74_HORVV; Uncharacterized protein
TrEMBLF2DWS31e-133F2DWS3_HORVV; Predicted protein
STRINGBRADI3G50490.11e-127(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.18e-43ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]