PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000327G0200

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 358aa MW: 38128.9 Da PI: 6.8152

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000327G0200	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.5	1.4e-08	182	226	8	52
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +r NR A r++R++Kka + Lee+v L+a N++L k+l++ PH01000327G0200 182 KRPSGNRAAVRKYREKKKAHTVLLEEEVVHLKALNQQLVKKLQNH 226 56667**********************************999874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.5E-12	172	243	No hit	No description
SMART	SM00338	1.5E-6	176	242	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.19E-6	179	226	No hit	No description
Pfam	PF07716	2.0E-13	180	232	IPR004827	Basic-leucine zipper domain
CDD	cd14686	1.58E-10	187	234	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MDEDDGGDRR RGLGGAELRL LSGKGSSDAL AARRGAGENW DVTAVPLARL PPRRRRATDL 60 HGSTSAQLPP TAPALPPRPR VCSSLLVATM DDGDLDFSNP DAFLCPTIGA DLPGSCSIDS 120 YFDDILKDTE HHACTHTHTC NPPVHDLSHT HTCVHVHTKI VSAPSDSAET SESPAENNVS 180 KKRPSGNRAA VRKYREKKKA HTVLLEEEVV HLKALNQQLV KKLQNHAALE AEVARLRCLL 240 VDIRGRIEGE IGAFPYQRPV KNIDLVSSVD QGSYLGGAQV MNSCDFRCND QMYCSPGMQV 300 RTMGEDGSMS GQALGQGACD VANIQCMGSA KSGSTKLPGC GGMGTMPAGC LPNVENN*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MDEDDGGDRR RGLGGAELRL LSGKGSSDAL AARRGAGENW DVTAVPLARL PPRRRRATDL  60
HGSTSAQLPP TAPALPPRPR VCSSLLVATM DDGDLDFSNP DAFLCPTIGA DLPGSCSIDS  120
YFDDILKDTE HHACTHTHTC NPPVHDLSHT HTCVHVHTKI VSAPSDSAET SESPAENNVS  180
KKRPSGNRAA VRKYREKKKA HTVLLEEEVV HLKALNQQLV KKLQNHAALE AEVARLRCLL  240
VDIRGRIEGE IGAFPYQRPV KNIDLVSSVD QGSYLGGAQV MNSCDFRCND QMYCSPGMQV  300
RTMGEDGSMS GQALGQGACD VANIQCMGSA KSGSTKLPGC GGMGTMPAGC LPNVENN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000327G0200

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094209	0.0	FP094209.1 Phyllostachys edulis cDNA clone: bphyem105j23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642505.1	1e-173	basic leucine zipper 19
Refseq	XP_015642506.1	1e-173	basic leucine zipper 19
Swissprot	Q8GTS2	3e-74	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A0D9WU69	1e-174	A0A0D9WU69_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0HVF4	1e-173	A0A0E0HVF4_ORYNI; Uncharacterized protein
STRING	ONIVA06G30110.1	1e-174	(Oryza nivara)
STRING	LPERR06G23100.1	1e-175	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4175	35	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-66	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]