PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000302G0180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bZIP | ||||||||
Protein Properties | Length: 152aa MW: 16960.1 Da PI: 7.6134 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.7 | 3.3e-15 | 28 | 86 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN +++ + ++ ++++e+ PH01000302G0180 28 RREKRRLSNRESARRSRLRKQQHLDELVQEVARLKAENAHVLARANDIAGQYVRVEQEN 86 79*************************************99999999988888887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.4E-16 | 24 | 88 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.714 | 26 | 89 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.1E-11 | 28 | 73 | No hit | No description |
SuperFamily | SSF57959 | 9.38E-11 | 28 | 82 | No hit | No description |
Pfam | PF00170 | 5.0E-12 | 28 | 86 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.05E-17 | 29 | 79 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 31 | 46 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MSSSSLSPAG RLSGSDGDSG DIMAAGNRRE KRRLSNRESA RRSRLRKQQH LDELVQEVAR 60 LKAENAHVLA RANDIAGQYV RVEQENTVLR ARASELGDRL RSVNEVLRVV EEFSGVAMDI 120 QEECPPDDPL LRPWQIPYPG AAMPIAAHML QY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 46 | RRSRLRK |
2 | 40 | 47 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000302G0180 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094800 | 0.0 | FP094800.1 Phyllostachys edulis cDNA clone: bphylf041c24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003579247.1 | 2e-89 | ocs element-binding factor 1 | ||||
Swissprot | P24068 | 1e-82 | OCS1_MAIZE; Ocs element-binding factor 1 | ||||
TrEMBL | I1IHI8 | 4e-88 | I1IHI8_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G04720.1 | 6e-89 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1886 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62420.1 | 2e-34 | basic region/leucine zipper motif 53 |
Publications ? help Back to Top | |||
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