PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000261G0320
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 213aa    MW: 24501.4 Da    PI: 5.7397
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000261G0320genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55e-1864150195
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k++++s+v++  +l lp  f++++   ++++++++lede+g +++  +   +++ +  l++GW++F   ++L++gD++vF+l++ ++f+   
  PH01000261G0320  64 FVKTMVRSHVSSCFWLGLPTWFCKKYL--PPREVKMVLEDEEGVEFDAVY--IGNRTG--LSGGWRGFSMHHNLEDGDSLVFELVEPDRFKI-- 149
                      99************************5..34779****************..555444..***********************998788844.. PP

                      E CS
               B3  95 k 95 
                       
  PH01000261G0320 150 Y 150
                      3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-2156153IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-2457153IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-2762151No hitNo description
SMARTSM010197.1E-2164155IPR003340B3 DNA binding domain
PROSITE profilePS5086312.12564155IPR003340B3 DNA binding domain
PfamPF023627.5E-1764151IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSEVRHLPTK FDELDGFLRR RRGCKSAEYG REYTGRISSY EQQQRAFRRA EKLQDSLDPE  60
NPSFVKTMVR SHVSSCFWLG LPTWFCKKYL PPREVKMVLE DEEGVEFDAV YIGNRTGLSG  120
GWRGFSMHHN LEDGDSLVFE LVEPDRFKIY IMKAIDEDVN EAEPDDRNAD GDTKDTNPTK  180
EDPDQKDSPV AEHPSNPEPL KGAKRRKLRG RC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199205LKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000261G0320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0949790.0FP094979.1 Phyllostachys edulis cDNA clone: bphyst037c23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568233.11e-108B3 domain-containing protein Os05g0481400
SwissprotQ5KQI41e-105Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A0D9WHT11e-106A0A0D9WHT1_9ORYZ; Uncharacterized protein
STRINGLPERR05G16310.11e-107(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-42B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]