PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000256G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 326aa    MW: 35075.1 Da    PI: 4.8945
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000256G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.31.1e-26157215259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  PH01000256G0230 157 SDLWAWRKYGQKPIKGSPYPRGYYKCSSIkGCMARKMVERSPAKPGVLIVTYMAEHCHP 215
                      799***********************9987***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.308151217IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-27152217IPR003657WRKY domain
SuperFamilySSF1182901.44E-24154217IPR003657WRKY domain
SMARTSM007741.6E-31156216IPR003657WRKY domain
PfamPF031062.4E-22158215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEHFNDWDLQ AVVRSCSFSH PAEPEEPAGP PRGEVPAAPE AEADEPRERA PEVVRGSARA  60
AVEAAKGASL YDLEYLDLDH KPFLLPTSSQ ARAAGDDGHE VMMISFPAAA ASTSGMQPRM  120
PPGRKPSIRT PRPKRSKKSQ LKKVVCEVPV ADGGVSSDLW AWRKYGQKPI KGSPYPRGYY  180
KCSSIKGCMA RKMVERSPAK PGVLIVTYMA EHCHPVPTQL NALAGTTRQK STPGEDHPTT  240
SPKNHEDDPV DRAGGNVGEA VKCEDDSNET SAMAVDGGTE EAAAADDENE FWSAGVGLDE  300
FLAPVDDDFD HVFEEDGVLG RRLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-19138218280Disease resistance protein RRS1
5w3x_D1e-19138218280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000256G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114161e-157AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706011e-157AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174842.11e-146WRKY transcription factor 22-like
TrEMBLA0A3B6GWY31e-146A0A3B6GWY3_WHEAT; Uncharacterized protein
STRINGONIVA01G26290.11e-133(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-40WRKY family protein