PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000242G1360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 264aa    MW: 29034.7 Da    PI: 6.6194
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000242G1360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.87.1e-26110170158
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      ldDg +WrKYGqK++ g+++pr+Y+rCt++    C+++k+v+r+++dp +++++Y g H++
  PH01000242G1360 110 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtkACHATKQVQRADDDPLLFDVVYLGAHTC 170
                      58***************************98889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-2798172IPR003657WRKY domain
SuperFamilySSF1182901.14E-24103172IPR003657WRKY domain
PROSITE profilePS5081120.3105168IPR003657WRKY domain
SMARTSM007741.7E-37110172IPR003657WRKY domain
PfamPF031069.1E-25111170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAVCSERHTL TSELTQLLAM ARELEAHMDQ DPAAARELCR ARASSVDKSI RIARSCCPES  60
PRSAAGSPRG DGQDQAGGNA GKDAQFKKRK GMPKVRIQVR VRSVQDVGPL DDGLSWRKYG  120
QKDILGAKYP RAYFRCTHRH TKACHATKQV QRADDDPLLF DVVYLGAHTC GQAAQPNGVQ  180
MPPSLVDAEQ LQPGRAGQEQ SLMLAAETEW IQGLEPMTPL PFPSTPAGYG YAAGDLRVDM  240
DFETQFDEFF VNPSEFFHSG IENL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-22107170568OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000242G1360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0913200.0FP091320.1 Phyllostachys edulis cDNA clone: bphyem105f20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638413.12e-87probable WRKY transcription factor 41
TrEMBLA0A0A9HP895e-95A0A0A9HP89_ARUDO; Uncharacterized protein
STRINGPavir.J01329.1.p1e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-36WRKY family protein