PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000237G0420
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 515aa    MW: 56442.4 Da    PI: 8.2642
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000237G0420genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.82.6e-103455599
                     ETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3 55 ksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                     +++r++lt+GW++Fv+ ++L +gD v+F   + ++++l+++v+r+
  PH01000237G0420  3 QPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RGDDGKLRLGVRRA 45
                     6789*************************..3489999***9986 PP
2Auxin_resp103.23.1e-3470150182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +a++++++s+F+v++ Pr+++seF+v+++k++k+l++++s+GmRfk+ + +ed++er  sG+++g+s++dp++Wp+SkWr+L
  PH01000237G0420  70 VASSLENRSIFHVCFDPRSGASEFIVPYWKFSKSLSHPFSIGMRFKFCYGSEDANERP-SGLISGISEVDPIKWPGSKWRCL 150
                      578899**************************************************99.9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.264146IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-11247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-9281IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-7345IPR003340B3 DNA binding domain
PfamPF065072.0E-2771150IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGQPRRHLLT TGWSSFVNKK KLVSGDAVLF LRGDDGKLRL GVRRAVQLRN EALFEAVNNN  60
DSKLRTLSAV ASSLENRSIF HVCFDPRSGA SEFIVPYWKF SKSLSHPFSI GMRFKFCYGS  120
EDANERPSGL ISGISEVDPI KWPGSKWRCL LVRWDDSTDC NHQNRVSPWE IERVGGTISV  180
THCLSASSSK RTKLYFPQGN LDAPIIVSFS HMSINPRTKI LDGNGRPDSM ETENFHRVLQ  240
GQELMGSRTH GVECSQSPDV TKFRTPDHRR FSADVRSCMR NGPTSGLPQQ NTEFTYQPVG  300
FGESVRFPEV LQGQEMSQVV PFFQGTTFDA RTQNGRVGSF NYVRVSAAPS GLPAPTQGYS  360
LPQFTLSAAK VSSPSSVMFN QATVPQLEWE GRTNHKGACG NQCAPLEMLR ETETWPSVQR  420
QMPSEAGCHQ FDTGKASAPV NVAEPGSATG EVGRSSCMLF GFSLTEKVLG ADKEGAKEGN  480
NEADCQNPRV LELFGHSHST PSALHALCAA PLGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A8e-392172182353Auxin response factor 1
4ldy_B8e-392172182353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000237G0420
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568111.10.0auxin response factor 14 isoform X2
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A2K2D9G10.0A0A2K2D9G1_BRADI; Auxin response factor
STRINGBRADI2G19867.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-75ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]