PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000225G1300
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 271aa    MW: 31898.8 Da    PI: 8.8228
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000225G1300genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.61.8e-2418100186
         trihelix   1 rWtkqevlaLiearremeer.lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W  qe+++Li+ar e+e++ + +++++k+lWe+v++++rerg++r++ qCk+kw+nl +ryk  ++++ ++     ++cp+f++l+
  PH01000225G1300  18 QWGVQETRELIAARGELEREaFAARRSAKTLWEAVAARLRERGYRRTADQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFEELH 100
                      7***************9975266789**************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122036.19E-191783No hitNo description
PfamPF138371.5E-2218101No hitNo description
PROSITE profilePS500907.3991976IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.4E-41977IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MMEAGVGGGG GRDERVPQWG VQETRELIAA RGELEREAFA ARRSAKTLWE AVAARLRERG  60
YRRTADQCKC KWKNLVNRYK GKETSDPENG RQCPFFEELH AVFTERGRSM QRQLLESESG  120
ASVKKKLKRP SGDRSDESDD EGDDGEESDE ENPIRSKRRK SDYKRQQSQR MTEKSKTGIS  180
SIHELLKDFL VQQQRMDTQW REMMERRAQE RLVFEQEWRQ SMQKLEQERL MLEHSWMERE  240
EQRRMREEAR AGKRDALLTT LLNKLLQEDL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000225G1300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448463.11e-138trihelix transcription factor GT-3b
TrEMBLA0A059Q3B01e-145A0A059Q3B0_9POAL; Transcription factor
STRINGPavir.J40572.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.16e-32Trihelix family protein