PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000225G0780
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 270aa    MW: 29561.6 Da    PI: 8.7662
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000225G0780genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1071e-331973155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrWtp+LHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYR+
  PH01000225G0780 19 KPRLRWTPDLHERFVDAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRM 73
                     79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8871676IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-331676IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-241973IPR006447Myb domain, plants
SuperFamilySSF466892.33E-161974IPR009057Homeodomain-like
PfamPF002491.4E-92172IPR001005SANT/Myb domain
PfamPF143792.5E-21118162IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEGSYGGRAE AVALSRDPKP RLRWTPDLHE RFVDAVTKLG GPDKATPKSV LRLMGMKGLT  60
LYHLKSHLQK YRMGRQTMKG SGPELANSGG FTAQGISFST AAPPCVPAGE NNTGEIPLAD  120
ALRYQIQVQQ KLHEQLEVQK KLQMRIEAQG RYLKAILVKA QKNISFDANG AANLDSTRSQ  180
LMDFNLALSG FMDNATRGYE ENNEQMVKAI SDDNLKSNSL GFQFNHVGSQ EAKDVKCTPK  240
TEDSLLLDLN IRGGYDLSSR GMPGCELDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-221975157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-221975157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-221975157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-221975157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000225G0780
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064003e-70AK106400.1 Oryza sativa Japonica Group cDNA clone:002-102-G05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635409.11e-150myb family transcription factor PHL11 isoform X2
TrEMBLA0A0E0H5H31e-149A0A0E0H5H3_ORYNI; Uncharacterized protein
STRINGONIVA04G23170.11e-150(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.13e-67G2-like family protein