PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000201G0710

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

CAMTA

Protein Properties

Length: 1264aa MW: 141064 Da PI: 6.3979

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000201G0710	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	176.7	3e-55	240	356	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+e+n++fq PH01000201G0710 240 KEaHQRWLRSAEICEILKNYRNFRIAPEPPNRPSSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEDNENFQ 333 5559**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rr+yw+Lee++ +ivlvhyle+k PH01000201G0710 334 RRTYWMLEEDFMHIVLVHYLETK 356 ******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	80.852	235	361	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.4E-75	238	356	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.0E-49	241	354	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.7E-6	683	770	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	1.3E-6	684	762	IPR002909	IPT domain
SuperFamily	SSF81296	3.2E-17	684	770	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	5.6E-15	876	981	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	9.2E-16	879	980	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.53E-11	879	977	No hit	No description
PROSITE profile	PS50297	15.671	885	979	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	8.736	918	950	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	6.37E-8	1078	1131	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.4	1080	1102	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.096	1081	1110	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.034	1082	1101	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0022	1103	1125	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.56	1104	1128	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.5E-4	1106	1125	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1264 aa Download sequence Send to blast
MGPFQVVYGF NPRTPIDLLP IPSSKKVNLD AKKRVEFVLK LHETTKENIE RMNARYKIAA 60 SHGRKSLTFE LGDLIWLHLR KDRFPELRKS KLMPRADGPF KVLAKINDNA YKLDLPAEFR 120 VSLTFNIAGI DPYDQIGTTR VHHTKTLGLA AVASYFKLMS LPLDEVVHCN RSSCGGPLAR 180 SDWSSSDLAR PRPEEVGRPM GTVGWRKSPV VAEEQAFLSL EDDWALGIGV LLGDIEQILK 240 EAHQRWLRSA EICEILKNYR NFRIAPEPPN RPSSGSLFLF DRKVLRYFRK DGHNWRKKKD 300 GKTVKEAHER LKSGSIDVLH CYYAHGEDNE NFQRRTYWML EEDFMHIVLV HYLETKGGKS 360 SRARGNNDML QAAVVDSPLS QLPSQTLEGE SSLSGQASEY EDAESVSLIH IPIMHSVSKA 420 KFGAADTYSG GAGYYSFTQM QQHQNGTGPV IDASIFSPYA PASSIGNYQG LQHAIAHNTS 480 FYSSSQDNSP VVLNDSSVGL AMNGRESQTD LPSWNEVMKP DKGSVQMPRL QLPVHPEEGT 540 FTEGPGVEYL TFDEVYSDGL SLNDFSADGE SPWQFSSATG DLSSTENNFP QNDGSLEAAI 600 GYPFLKSQSS NLSDILKDSF KKTDSFTRWM SKELPEVEDS QIQSSSGAYW NTEEADSIIE 660 ASSREPLDQF TVAPMLSQDQ LFSIVDFSPS WTYTGSKIKV LVTGKFLNTN QVTERCKWSC 720 MFGEVEVPAE ISADGTLHCY SPPHKPGRVP FYITCSNRLA CSEVREFEFR PSPSQYMDAP 780 SPHGATIKVY FQIRLDKLLS LVPDEYQATI SNPSLEMIDL SKKISSLMTK NDEWSKLLKL 840 ADDNELLTDD QQDQFAENLI KEKLHVWLLH KVGDGGKGPS VLDDEGQGVL HLAAALGYDW 900 AIRPTVTAGV NINFRDVHGW TALHWAAFCG RERTVVALIA LGAAPGALTD PTPDFPSVST 960 PADLASANGH KGISGFLAES YLTSHLQVLN LKEASMAEIS GLPGIGDVTE RSASQPAIGD 1020 SLDAVRNAAQ AAARIYQVFR VQSFQRKQAV QYEDEKSGIS DERALSLLSV KPSKPGQLDP 1080 LHAAASRIQN KFRGWKGRKE FLLIRQRIVK IQAHVRGHQV RKHYRKIVWS VGIVEKVILR 1140 WRRRGAGLRG FRSAEAAIES SSCGTSSNLV ADKPAADDYD FLQEGRKQTE ERLQKALARV 1200 KSMAQYPEAR DQYQRILTVV SKMQESQAMQ EKMLEDSTEM DEGYFMSEFK ELWNDDTPLP 1260 DYF*

Sequence ? help Back to Top

Protein Sequence Length: 1264 aa Download sequence Send to blast

MGPFQVVYGF NPRTPIDLLP IPSSKKVNLD AKKRVEFVLK LHETTKENIE RMNARYKIAA  60
SHGRKSLTFE LGDLIWLHLR KDRFPELRKS KLMPRADGPF KVLAKINDNA YKLDLPAEFR  120
VSLTFNIAGI DPYDQIGTTR VHHTKTLGLA AVASYFKLMS LPLDEVVHCN RSSCGGPLAR  180
SDWSSSDLAR PRPEEVGRPM GTVGWRKSPV VAEEQAFLSL EDDWALGIGV LLGDIEQILK  240
EAHQRWLRSA EICEILKNYR NFRIAPEPPN RPSSGSLFLF DRKVLRYFRK DGHNWRKKKD  300
GKTVKEAHER LKSGSIDVLH CYYAHGEDNE NFQRRTYWML EEDFMHIVLV HYLETKGGKS  360
SRARGNNDML QAAVVDSPLS QLPSQTLEGE SSLSGQASEY EDAESVSLIH IPIMHSVSKA  420
KFGAADTYSG GAGYYSFTQM QQHQNGTGPV IDASIFSPYA PASSIGNYQG LQHAIAHNTS  480
FYSSSQDNSP VVLNDSSVGL AMNGRESQTD LPSWNEVMKP DKGSVQMPRL QLPVHPEEGT  540
FTEGPGVEYL TFDEVYSDGL SLNDFSADGE SPWQFSSATG DLSSTENNFP QNDGSLEAAI  600
GYPFLKSQSS NLSDILKDSF KKTDSFTRWM SKELPEVEDS QIQSSSGAYW NTEEADSIIE  660
ASSREPLDQF TVAPMLSQDQ LFSIVDFSPS WTYTGSKIKV LVTGKFLNTN QVTERCKWSC  720
MFGEVEVPAE ISADGTLHCY SPPHKPGRVP FYITCSNRLA CSEVREFEFR PSPSQYMDAP  780
SPHGATIKVY FQIRLDKLLS LVPDEYQATI SNPSLEMIDL SKKISSLMTK NDEWSKLLKL  840
ADDNELLTDD QQDQFAENLI KEKLHVWLLH KVGDGGKGPS VLDDEGQGVL HLAAALGYDW  900
AIRPTVTAGV NINFRDVHGW TALHWAAFCG RERTVVALIA LGAAPGALTD PTPDFPSVST  960
PADLASANGH KGISGFLAES YLTSHLQVLN LKEASMAEIS GLPGIGDVTE RSASQPAIGD  1020
SLDAVRNAAQ AAARIYQVFR VQSFQRKQAV QYEDEKSGIS DERALSLLSV KPSKPGQLDP  1080
LHAAASRIQN KFRGWKGRKE FLLIRQRIVK IQAHVRGHQV RKHYRKIVWS VGIVEKVILR  1140
WRRRGAGLRG FRSAEAAIES SSCGTSSNLV ADKPAADDYD FLQEGRKQTE ERLQKALARV  1200
KSMAQYPEAR DQYQRILTVV SKMQESQAMQ EKMLEDSTEM DEGYFMSEFK ELWNDDTPLP  1260
DYF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000201G0710

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101479	0.0	AK101479.1 Oryza sativa Japonica Group cDNA clone:J033041A20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010234691.1	0.0	calmodulin-binding transcription activator 3 isoform X1
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A3L6TUJ2	0.0	A0A3L6TUJ2_PANMI; Calmodulin-binding transcription activator 3-like isoform X2
STRING	Pavir.Ia02749.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP608	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]