PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000200G0300
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 300aa    MW: 32363.9 Da    PI: 8.3744
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000200G0300genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-311971254
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                     prlrWt eLH++Fv+a+e LGG+ekAtPk il+lm+vkgLt++hvkSHLQ+YR
  PH01000200G0300 19 PRLRWTAELHRSFVQAIECLGGQEKATPKLILQLMGVKGLTISHVKSHLQMYR 71
                     8**************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-301572IPR009057Homeodomain-like
PROSITE profilePS5129411.8371575IPR017930Myb domain
SuperFamilySSF466895.73E-161771IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-241971IPR006447Myb domain, plants
PfamPF002493.9E-82071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGSSGRNGAV RQYIRSKVPR LRWTAELHRS FVQAIECLGG QEKATPKLIL QLMGVKGLTI  60
SHVKSHLQMY RGTRLGTGMK EMQPQLQRKH SCAADEQGPK EFLCPPLKRT RMGTELTEAT  120
YKGMQGSQGI SEMRTTGTQY CIDDYMQAMA MERRIKEEGL RWQRGAAAAA DGAAAASNLQ  180
TVGCLVQESD PFKIIKPEAH HLGLAVKQQG PKENNGSGCF LFSSAARDEP DEPPGQCSLS  240
LSLGLDPKCT DAVACSPSES SCILSSSSRR RSFSDCSDHS GCFVAPGVNL ELSMSVCGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000200G0300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1018490.0AK101849.1 Oryza sativa Japonica Group cDNA clone:J033069K05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634437.11e-136putative Myb family transcription factor At1g14600
TrEMBLA0A0D3FZ141e-135A0A0D3FZ14_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZPD71e-135A0A0D9ZPD7_9ORYZ; Uncharacterized protein
TrEMBLI1PNX81e-135I1PNX8_ORYGL; Uncharacterized protein
TrEMBLQ7XUI61e-135Q7XUI6_ORYSJ; OSJNBa0005N02.4 protein
STRINGOGLUM04G21960.11e-136(Oryza glumipatula)
STRINGOS04T0566600-011e-136(Oryza sativa)
STRINGORGLA04G0189700.11e-136(Oryza glaberrima)
STRINGOBART04G21930.11e-136(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.15e-33G2-like family protein