PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000197G0150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ZF-HD
Protein Properties Length: 335aa    MW: 35411.6 Da    PI: 5.1218
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000197G0150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.77.7e-30164216458
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      +rY+eCl+NhAa+lG+h++DGCgEfmps+++   aaal CaACgCHR+FHRre +
  PH01000197G0150 164 WRYRECLRNHAARLGAHVLDGCGEFMPSTSDG--AAALACAACGCHRSFHRREAV 216
                      79*************************95554..99****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-26164215IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-8165214IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-25165214IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.52166214IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEYKRSSHVE EEEEEEEEDE EEDDEEEEEE DEEIKGHHYT TAAATGAPQQ LHAQVLGSSA  60
SSPSSLMESA AFSRPLLPPN SSLVSTPPLP PAFLSPHRHL HPRRAERERE RTVGAAVEAH  120
HQHHQEPARN GVLGGGATPP PVSTLALVTS GGGAVGPAAE ASPWRYRECL RNHAARLGAH  180
VLDGCGEFMP STSDGAAALA CAACGCHRSF HRREAVVVSP APSPAAIAAA GRCGGVPLGD  240
PNRNLLVVNS CSSSYLGGSN VSRGGRGAIL FELLLAFCQS CGFFFLPFFG GVVLLDFGQK  300
AGACESGLLC QRLIKEKEAL CLSVYVGWMV VQSE*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000197G0150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3580059e-53AK358005.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1066M24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452677.13e-51zinc-finger homeodomain protein 7 isoform X1
SwissprotQ8S3Q91e-42ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLA0A3L6ESX91e-51A0A3L6ESX9_MAIZE; Zinc-finger homeodomain protein 7
STRINGPavir.J31681.1.p7e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-11zinc finger homeodomain 1