PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000193G0970
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 348aa    MW: 37812.9 Da    PI: 10.2179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000193G0970genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-1197152355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-.STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkas..kapskK.lsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++iN+++  L++l+P +   +a++k    Ka++L + ++Y++sLq
  PH01000193G0970  97 NSHSLAERFRREKINERMKLLQDLVPGCNkmNAYDKQiTGKAMMLDEIINYVQSLQ 152
                      58*************************87797777777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.79E-1092156No hitNo description
PROSITE profilePS5088815.63794151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-1694168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1694167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-997152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-10100157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGFSFTILPV SLTISTSMFQ LSPDTQISRN MSIEKCLKGS KRKGSGEGSS SMHSQEETGA  60
MSQREVSIER ANEKTGDADT NREDYVHVRA KRGQATNSHS LAERFRREKI NERMKLLQDL  120
VPGCNKMNAY DKQITGKAMM LDEIINYVQS LQRQVEFLSM KLSAISPELN CDLDLQDILC  180
SQDARAAFPG YSPRLSNVHP SLYRPSQQGL SRAELFGSIP NLANVHMART AQLSAFPQST  240
LSSTDSVEFR HRGSPVRSFP SPVARGFRLP TPLRAPALVE AQARGKSVLF LDGGLPPHGT  300
AAGVARPAVW ASGKRSVVGR LLDRQSWAPG KRFDGGAPGA GGPNLDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000193G0970
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558437.11e-124transcription factor bHLH74
TrEMBLA0A0A9JML81e-123A0A0A9JML8_ARUDO; Uncharacterized protein
STRINGBRADI1G69190.21e-123(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.14e-45bHLH family protein