PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000185G0320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | C2H2 | ||||||||
Protein Properties | Length: 215aa MW: 22659.6 Da PI: 8.0793 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00058 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F + L H +H PH01000185G0320 81 HRCSVCGKAFASYQALGGHKASH 103 79**********99998888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.73E-10 | 81 | 103 | No hit | No description |
Pfam | PF13912 | 4.6E-13 | 81 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.159 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.023 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.73E-10 | 131 | 158 | No hit | No description |
PROSITE profile | PS50157 | 9.307 | 136 | 158 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-12 | 136 | 160 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 136 | 158 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 138 | 158 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MAVEAVLEAA VIPSPPSRET AAAGGSEEES TVQHVEGWAK RKRSRRQRAL APTEEEYLAL 60 CLLMLARGHR DRVPEPAAAE HRCSVCGKAF ASYQALGGHK ASHRKPPAPA AGAEEPQATA 120 PSSSAVSSSG SGSKLHECNV CRKTFPTGQA LGGHKRCHYD GTIGSKAAVS TSTGRGFDLN 180 LPALPDIAER CTAEAEEEEV LSPLAFKKPR LMIPA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000185G0320 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP097519 | 0.0 | FP097519.1 Phyllostachys edulis cDNA clone: bphyem107g20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150049.1 | 5e-77 | zinc finger protein 1-like | ||||
Swissprot | Q42430 | 1e-48 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A3B6LH89 | 3e-76 | A0A3B6LH89_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446TX49 | 3e-76 | A0A446TX49_TRITD; Uncharacterized protein | ||||
STRING | Traes_4DS_676CACEAC.1 | 4e-72 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 2e-44 | salt tolerance zinc finger |