PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000178G0580
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 424aa    MW: 46746.1 Da    PI: 9.361
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000178G0580genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.3e-11130169541
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                      k  rr+++NReAAr+sR RKka+i++Le    + ++Le+e
  PH01000178G0580 130 KTLRRLAQNREAARKSRIRKKAYIQQLESgrmRLAQLEQE 169
                      7889***********************9633356666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.5E-9122175No hitNo description
PfamPF077168.2E-9126171IPR004827Basic-leucine zipper domain
SMARTSM003389.1E-7126198IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.749128171IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.41E-7130171No hitNo description
PROSITE patternPS000360133148IPR004827Basic-leucine zipper domain
PfamPF141445.3E-25208282IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MPRRDPEGYD MPSDLDQVLL DYFDGQQDKP STQEPHKPLK FVKETLNIFP SQPMHVEPSP  60
KGSMTPSAPN AAGSSRRSPP SKAAGGPLAI GKGSKAEFKR EGSSTGKRSS TAAAAASSSE  120
LEEPKKPDPK TLRRLAQNRE AARKSRIRKK AYIQQLESGR MRLAQLEQEI QMTRAQGALW  180
GTGTLSPDAA LFNLEYERWR EAHHKMIGRL RAAAEDHHRP DGELQPYVDD AASHYGVLMD  240
HKAKLAGADP LHLLSGLWKG AAERCFLWIG GFRPSELIKI VLRHVEPLTE QQLLGVCGVQ  300
QSAKREEDAL DGELDALLRS LSEVVSSSDA LQPPMIYYHP ADMAGYMGHY VSLAMGKLAS  360
LETFLRQADE LRLQTLHALR QILTVRQSAR CFVAVDDYFS RVRALSTLWT TSRPPAVARG  420
PTG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000178G0580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965885.10.0transcription factor TGAL8 isoform X1
SwissprotQ69T210.0TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBLI1Q3N60.0I1Q3N6_ORYGL; Uncharacterized protein
STRINGORGLA06G0174900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129722126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-103bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]