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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PH01000162G1360 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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| Family | GATA | ||||||||
| Protein Properties | Length: 500aa MW: 56425.3 Da PI: 9.8009 | ||||||||
| Description | GATA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GATA | 37.9 | 2.5e-12 | 350 | 382 | 1 | 32 |
GATA 1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrk 32
Cs C + +Tp+WRr++ +g+k+LCnaC l+ +
PH01000162G1360 350 CSRCLSNQTPQWRRDGpSGPKMLCNACALRLKA 382
**************766************9986 PP
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| 2 | GATA | 53.3 | 3.8e-17 | 432 | 466 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C++C + kTp+WR gp g+ktLCnaCG+++++ +l
PH01000162G1360 432 CTHCMSYKTPQWRAGPLGPKTLCNACGVRFKSGRL 466
*******************************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Hamap | MF_00408 | 28.094 | 19 | 198 | IPR000814 | TATA-box binding protein |
| Gene3D | G3DSA:3.30.310.10 | 5.9E-40 | 20 | 105 | IPR012295 | Beta2-adaptin/TBP, C-terminal domain |
| SuperFamily | SSF55945 | 4.24E-33 | 21 | 114 | No hit | No description |
| CDD | cd04516 | 1.91E-131 | 22 | 195 | IPR033710 | TATA-box binding protein, eukaryotic |
| Pfam | PF00352 | 2.8E-32 | 24 | 103 | IPR000814 | TATA-box binding protein |
| PRINTS | PR00686 | 8.0E-67 | 25 | 40 | IPR000814 | TATA-box binding protein |
| PRINTS | PR00686 | 8.0E-67 | 49 | 68 | IPR000814 | TATA-box binding protein |
| PROSITE pattern | PS00351 | 0 | 52 | 101 | IPR030491 | TATA-box binding protein, conserved site |
| PRINTS | PR00686 | 8.0E-67 | 68 | 86 | IPR000814 | TATA-box binding protein |
| Gene3D | G3DSA:3.30.310.10 | 1.1E-35 | 107 | 196 | IPR012295 | Beta2-adaptin/TBP, C-terminal domain |
| Pfam | PF00352 | 6.2E-32 | 112 | 194 | IPR000814 | TATA-box binding protein |
| SuperFamily | SSF55945 | 7.07E-30 | 112 | 197 | No hit | No description |
| PRINTS | PR00686 | 8.0E-67 | 115 | 131 | IPR000814 | TATA-box binding protein |
| PRINTS | PR00686 | 8.0E-67 | 139 | 154 | IPR000814 | TATA-box binding protein |
| PROSITE pattern | PS00351 | 0 | 143 | 192 | IPR030491 | TATA-box binding protein, conserved site |
| PRINTS | PR00686 | 8.0E-67 | 158 | 174 | IPR000814 | TATA-box binding protein |
| SuperFamily | SSF57716 | 1.47E-8 | 343 | 384 | No hit | No description |
| PROSITE profile | PS50114 | 11.2 | 344 | 381 | IPR000679 | Zinc finger, GATA-type |
| SMART | SM00401 | 3.1E-10 | 344 | 398 | IPR000679 | Zinc finger, GATA-type |
| Gene3D | G3DSA:3.30.50.10 | 3.7E-11 | 348 | 382 | IPR013088 | Zinc finger, NHR/GATA-type |
| CDD | cd00202 | 6.12E-9 | 349 | 381 | No hit | No description |
| Pfam | PF00320 | 2.1E-10 | 350 | 382 | IPR000679 | Zinc finger, GATA-type |
| PROSITE profile | PS50114 | 11.121 | 426 | 462 | IPR000679 | Zinc finger, GATA-type |
| SMART | SM00401 | 2.4E-14 | 426 | 480 | IPR000679 | Zinc finger, GATA-type |
| SuperFamily | SSF57716 | 1.05E-13 | 430 | 490 | No hit | No description |
| Gene3D | G3DSA:3.30.50.10 | 9.0E-13 | 431 | 464 | IPR013088 | Zinc finger, NHR/GATA-type |
| CDD | cd00202 | 3.11E-12 | 431 | 478 | No hit | No description |
| Pfam | PF00320 | 7.3E-15 | 432 | 466 | IPR000679 | Zinc finger, GATA-type |
| PROSITE pattern | PS00344 | 0 | 432 | 457 | IPR000679 | Zinc finger, GATA-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006352 | Biological Process | DNA-templated transcription, initiation | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 500 aa Download sequence Send to blast |
MAEAVLEGSE PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV 60 IMRIREPKTT ALIFASGKMV CTGAKSEQQS KLAARKYARI IQKLGFPAKF KDFKVQNIVG 120 SCDVKFPIRL EGLAYSHGAF SSYEPELFPG LIYRMKQPKI VLLIFVSGKI VLTGAKVRDE 180 TYTAFENIYP VLTEFRKVQQ WFHAMLLFTL QESEDGSVEW LSIYVDGCLS SSASYTNSVF 240 VEQAPTTMTN QNAAKPKLPP PSSSTSRRKK RSLASVINDD DDQHCFTLFV EPPLLLLDQK 300 HWLAESELIL PKKDKDQELV RQQEREQEED KKCKMSAGMQ FQQEQLVRRC SRCLSNQTPQ 360 WRRDGPSGPK MLCNACALRL KAGNGLTTVS KKLCGQEIDK EQEKRKRQDK KKIKKTAYVN 420 EELPPEEPVK RCTHCMSYKT PQWRAGPLGP KTLCNACGVR FKSGRLLPEY RPANSPTFVS 480 YMHSNSHKKV MQLRQAVEP* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1qn5_B | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qn6_A | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qn6_B | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qn7_A | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qn7_B | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qn8_A | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qn8_B | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qn9_A | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qn9_B | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qna_A | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qna_B | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qnb_A | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qnb_B | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qnc_A | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qnc_B | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qne_A | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1qne_B | 1e-131 | 1 | 200 | 1 | 200 | TRANSCRIPTION INITIATION FACTOR TFIID-1 |
| 1vok_A | 1e-131 | 1 | 200 | 1 | 200 | TATA-BOX-BINDING PROTEIN |
| 1vok_B | 1e-131 | 1 | 200 | 1 | 200 | TATA-BOX-BINDING PROTEIN |
| 1vol_B | 1e-131 | 1 | 200 | 1 | 200 | PROTEIN (TATA BINDING PROTEIN (TBP)) |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | PH01000162G1360 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | FP093040 | 0.0 | FP093040.1 Phyllostachys edulis cDNA clone: bphylf027k16, full insert sequence. | |||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP5962 | 36 | 56 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G45050.1 | 4e-34 | GATA transcription factor 2 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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