PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000157G0800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GATA | ||||||||
Protein Properties | Length: 218aa MW: 23218.9 Da PI: 6.5241 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.2 | 5.3e-19 | 129 | 162 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C + +Tp+WR gpdg++tLCnaCG+++++ + PH01000157G0800 129 CTHCAVEETPQWRLGPDGPRTLCNACGVRFKSGR 162 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.3E-15 | 123 | 173 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.556 | 123 | 159 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-15 | 125 | 186 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.3E-14 | 127 | 160 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.01E-15 | 128 | 177 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 129 | 154 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.2E-17 | 129 | 162 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MVGGGAADKD AAAQAEELPS GAGASLIGFF DHTVAVSPMT VAEGLEVAAG GEGQGEGEEE 60 EELEWLLNKD AFPSVETMAA EVEAAPARAA VGPRTKGLRR RRRVTAPWSL PPVLPSPPQA 120 AAGAPRRRCT HCAVEETPQW RLGPDGPRTL CNACGVRFKS GRLFPEYRPA NSPTFSPLLH 180 SNSHRRVQEM RRQSEDETSA ADRASAKARR AERAEDK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000157G0800 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC119796 | 1e-110 | AC119796.2 Oryza sativa Japonica Group chromosome 3 clone OJ1172F09, complete sequence. | |||
GenBank | AP014959 | 1e-110 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629220.1 | 4e-75 | GATA transcription factor 3 | ||||
Swissprot | Q8L4M6 | 1e-33 | GATA3_ARATH; GATA transcription factor 3 | ||||
TrEMBL | A0A0E0CV61 | 7e-83 | A0A0E0CV61_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G03410.1 | 6e-84 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1417 | 33 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 3e-33 | GATA transcription factor 1 |
Publications ? help Back to Top | |||
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