PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000140G1040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 666aa    MW: 72896.1 Da    PI: 4.3518
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000140G1040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.62e-221583168
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkky 68
                     l+pGfrFhPtdeelv++yL+++v g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k 
  PH01000140G1040 15 LAPGFRFHPTDEELVSYYLRRRVLGRRLRI-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKL 83
                     579***************************.99***************5448999999*******99985 PP
2NAM88.41.3e-279217652128
              NAM  52 kaeekewyfFskrdkkya.........tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++ +wyfF++ d+k +          g+r+nrat +gyWk+tgkd+ev++ +g++vg+kktLvf+ grapkge+t+Wvmheyrl
  PH01000140G1040  92 RSRDAQWYFFARLDRKLTgagaggrggPGNRTNRATPRGYWKTTGKDREVHH-RGKTVGMKKTLVFHAGRAPKGERTNWVMHEYRL 176
                      56788***********98777777665567**********************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-24984IPR003441NAC domain
PROSITE profilePS5100547.52215203IPR003441NAC domain
PfamPF023657.5E-2717176IPR003441NAC domain
SuperFamilySSF1019412.09E-2793181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MSPSPSDSSA AAVPLAPGFR FHPTDEELVS YYLRRRVLGR RLRIDAIAEV DLYRLEPWDL  60
PSLSRIRSRD AQWYFFARLD RKLTGAGAGG IRSRDAQWYF FARLDRKLTG AGAGGRGGPG  120
NRTNRATPRG YWKTTGKDRE VHHRGKTVGM KKTLVFHAGR APKGERTNWV MHEYRLLDAD  180
GTQKIGSGPQ NGAQYGASYM EEEWEEEDDA IDNAPASGTS TELAAVTDTA DDESNEEDEN  240
VYSNANELVQ VQEVLSQPEM APLQAQASKE TDDGSYGEGV ISLDEILQEP VSDVSVQNFG  300
KPEEQNAIDD SFSIADLCGY PMQDDGHVGQ NGPMHWSDPS NGDHTYWPLR TYSNQNHANG  360
TLSAEEFFDT GNDTNTYAGQ QQICPSDCQN LYLQTNGLPA PQQVDDNIVF HDASSNHKWV  420
DGKDDYVNVN DLLYQPVENQ SLFDMGDDLM AYFDATEDDF KFDILGSVEG SDSQLPDMSN  480
FAQKGDNMDG FTFDGISKTS DANTQYGASS SGSHENLYAD TGVPDVPMDD TVDKSFGKRL  540
VSMLGSIPAP PAMASEFPPA TGKSVGPLSA VNPHSSFHVT AGIMQLGGLT FSGSSERWPL  600
QKNGDFSLLL SFTVEGDVST KSIGYEPATR VSTIPMVLRS GLYLFFVSAM ILMSSYKIGS  660
CIYSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4191769140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000140G1040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570443.10.0NAC domain-containing protein 78
TrEMBLA0A2P9J4P90.0A0A2P9J4P9_BAMEM; NAC3 transcription factor
STRINGBRADI3G56080.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-57NAC domain containing protein 2