PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000133G0910
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GeBP
Protein Properties Length: 370aa    MW: 39073.7 Da    PI: 4.7551
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000133G0910genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.75.6e-3164163297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                      lfqrlw++e e+++L+G+++f++++g+   +++ d+  fye +++++sf++sk+ql+eK+rrLKkK++ + ++ a++g  ++f+++h+  i+++
  PH01000133G0910  64 LFQRLWTDEEELLILRGFLEFTSRRGTtfASHQyDTGPFYEEIRRQLSFDFSKNQLIEKLRRLKKKYRVCANRmAAQGGAFAFRSAHEGAIYDV 157
                      79************************99877778**************************************98899***************** PP

           DUF573  92 skkiWg 97 
                      ++ iW+
  PH01000133G0910 158 ARHIWR 163
                      *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.0E-2765162IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAAAAASHSS SSADDDEEGT DTDASSSDPA APQDPPPAPE PAGPIRPPPQ PQVEGAGAED  60
SRRLFQRLWT DEEELLILRG FLEFTSRRGT TFASHQYDTG PFYEEIRRQL SFDFSKNQLI  120
EKLRRLKKKY RVCANRMAAQ GGAFAFRSAH EGAIYDVARH IWRPALKRDG AVGGDASDED  180
DINPAAAAAA AAPPGVMEDG GSGNASAPTP RVRGGRRVRR RTAQETEAPL LPVTPALMLN  240
DVAKEPVVAA VENSVPVIAP PPPVPAPAPA PVTASSATEE AVRSILSPLL KELISSVAVA  300
GQTGLGFGGI GGTDILGLGF GVAGLNPGVP SDEKWRQQQI LELEVYLKRI ELVRENVTAA  360
LEELRSSEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000133G0910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738131e-165AK373813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044F12.
GenBankAK3764051e-165AK376405.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3123A01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566363.11e-152probable transcription factor At5g28040
TrEMBLA0A0E0JGE11e-151A0A0E0JGE1_ORYPU; Uncharacterized protein
STRINGOPUNC01G09340.11e-152(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.25e-34DNA-binding storekeeper protein-related transcriptional regulator