PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000131G1230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 22909.3 Da PI: 4.8725 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.5e-18 | 38 | 90 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + grWv+e+r+p g + r +lg+f tae+Aa+a++aa+ +l g PH01000131G1230 38 PVYRGVRRRGRVGRWVCEVRVP---GrRGSRLWLGTFATAEMAARAHDAAAIALSG 90 68*******************9...6455**********************99977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.8E-13 | 38 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.812 | 39 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-29 | 39 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-19 | 39 | 100 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-22 | 39 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-5 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-5 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MDTDATSPLS EEREYRTVWS EPPKRPAGRT KFRETRHPVY RGVRRRGRVG RWVCEVRVPG 60 RRGSRLWLGT FATAEMAARA HDAAAIALSG RAACLNFADS AWRLPVLPAS SLATAQEVKR 120 AVSEAVEAFR RDSVASTEPD EKDDDGSPGA PSESSDVFEF DDGFRFGDMD AGSYYASLAQ 180 GLLVDPPAAG AWWEDGEYGG WETALWSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-12 | 37 | 97 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:16284406}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000131G1230 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:12609047}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF028780 | 1e-96 | EF028780.1 Triticum aestivum CBFIVd-4.1 mRNA, complete cds. | |||
GenBank | JF729238 | 1e-96 | JF729238.1 Triticum aestivum clone 1740-J17 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802908.1 | 2e-82 | dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | Q3T5N4 | 6e-71 | DRE1B_ORYSJ; Dehydration-responsive element-binding protein 1B | ||||
TrEMBL | A0A0E0M3J9 | 2e-82 | A0A0E0M3J9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC09G15260.1 | 3e-83 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 1e-19 | C-repeat-binding factor 4 |