PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000122G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 287aa    MW: 30232 Da    PI: 5.4964
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000122G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.51.2e-22207269163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrk +NRe+ArrsR+RK++e+eeL++kv  L+a N++L++el +lkk ++ +++e+
  PH01000122G0020 207 EQELKRERRKRSNRESARRSRLRKQQECEELAQKVTDLTAINSTLRSELGQLKKDCEDMEAEN 269
                      789********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165962.7E-963184No hitNo description
Gene3DG3DSA:1.20.5.1709.3E-17203267No hitNo description
PfamPF001701.6E-20207269IPR004827Basic-leucine zipper domain
SMARTSM003381.3E-20207271IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.748209272IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-11210265No hitNo description
CDDcd147026.42E-18212262No hitNo description
PROSITE patternPS000360214229IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MASSASEDDR PNGAPVDPSA AAAPQTNAEW AASMQAYYAA AGHHYAWPLT QSMPHMAGEA  60
AVAAAAMAEG KSKRKSSGSP SGEDASWSGD GGSEESSEER DADADQKGSS SAKRRKSSIA  120
NAEGEPSQAA TVQNVAAESP FAARGRSASK LSVSATERAA FPNATPNLNI GMDLWSNSPS  180
ATMPSGQGEV NAGAPSQRNG ALSQMGEQEL KRERRKRSNR ESARRSRLRK QQECEELAQK  240
VTDLTAINST LRSELGQLKK DCEDMEAENS QLMVNTKPYS SFAMNT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223229RRSRLRK
2223230RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000122G0020
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317833.13e-96DNA-binding protein EMBP-1 isoform X2
SwissprotP250322e-59EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A2T7BZD18e-99A0A2T7BZD1_9POAL; Uncharacterized protein
STRINGPavir.J02462.1.p7e-90(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.16e-13basic region/leucine zipper transcription factor 16