PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000117G0520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 27885.8 Da PI: 10.4918 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.9 | 6.1e-34 | 18 | 161 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk.......rknr.atksgyWk. 84 lppGfrFhPtdeelvv+yL++k+ g +l++ vi+ev d+yk++Pwd+p a+e e yfF+ r + a g r +r +t+sg Wk PH01000117G0520 18 LPPGFRFHPTDEELVVQYLRRKALGFPLPA-AVIPEVhDLYKLDPWDIP---GASEGEKYFFAVRPAAGAGGGtklrgsgRCRRpTTASGCWKp 107 79****************************.8999999***********...3456799******99998554344444577777799*****6 PP NAM 85 atgkdkevlsk...kgelvglkktLvfy....kgrapkge...ktdWvmheyrl 128 a g++k+v+++ +++lvg+k+++vf k+rap+++ +tdWvmheyrl PH01000117G0520 108 AGGREKPVVASrcgGNHLVGVKRSMVFVlrgrKARAPRASpvgQTDWVMHEYRL 161 667899999988988899**********9776556666556679********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.07E-42 | 15 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.651 | 18 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-21 | 19 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MERAPVLVRH GELVLRQLPP GFRFHPTDEE LVVQYLRRKA LGFPLPAAVI PEVHDLYKLD 60 PWDIPGASEG EKYFFAVRPA AGAGGGTKLR GSGRCRRPTT ASGCWKPAGG REKPVVASRC 120 GGNHLVGVKR SMVFVLRGRK ARAPRASPVG QTDWVMHEYR LTLPPHKNGC LAQAKESEEW 180 VVCRIFQRNR PSRRPDHDER RVPGGHATVA QPTMIPPSLS ASSSSSCVTS SSDQEEVSSG 240 RKQDAAEAAA SKREA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-32 | 13 | 194 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-32 | 13 | 194 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-32 | 13 | 194 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-32 | 13 | 194 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-32 | 13 | 194 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-32 | 13 | 194 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-32 | 13 | 194 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-32 | 13 | 194 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-32 | 13 | 194 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-32 | 13 | 194 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-32 | 13 | 194 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-32 | 13 | 194 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-32 | 13 | 194 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-32 | 13 | 194 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000117G0520 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP092533 | 0.0 | FP092533.1 Phyllostachys edulis cDNA clone: bphyem116i07, full insert sequence. | |||
GenBank | FP100669 | 0.0 | FP100669.1 Phyllostachys edulis cDNA clone: bphyem206k13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151744.1 | 6e-87 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A1D6D493 | 1e-85 | A0A1D6D493_WHEAT; NAC domain-containing protein 18 | ||||
TrEMBL | A0A3B6RII0 | 1e-85 | A0A3B6RII0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446XDS2 | 1e-85 | A0A446XDS2_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453RMY8 | 1e-85 | A0A453RMY8_AEGTS; Uncharacterized protein | ||||
STRING | EMT32999 | 1e-83 | (Aegilops tauschii) | ||||
STRING | OB08G28540.1 | 6e-84 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-44 | NAC domain containing protein 83 |