PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000117G0310
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 298aa    MW: 32433.2 Da    PI: 6.5167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000117G0310genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27e-09141188455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  PH01000117G0310 141 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALVLDEIINYVQSLQ 188
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-17135203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-10135192No hitNo description
PROSITE profilePS5088815.332137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-16137201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6141188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-9143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MADFSSHHSL LLKMPAAFTN DSYPNISSFL LYNQSHARAH VSTTANANAS EGAAMVEDAS  60
LESSSAVLDT SPQGSASVDR KRKATEDSAT LSSAHSKDCK DGKNRRGKRP SKEVEERSTT  120
EEEAPKGYIH VRARRGQATD SHSLAERVRR ERISERMRML QALVPGCDKV TGKALVLDEI  180
INYVQSLQNQ VEFLSMRIAS MSPVLYGFGL DSDGLHDQAQ KIGGMFQEAL AMPAPVLNQA  240
SPAPSQAIMD TSTTSYSMQG QGGISFSQDN GSYLMQTVGE PRQEQLNQLV FNNMYSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000117G0310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0590410.0AK059041.1 Oryza sativa Japonica Group cDNA clone:001-021-D04, full insert sequence.
GenBankCT8305460.0CT830546.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN074O02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821629.11e-167transcription factor bHLH137-like isoform X1
TrEMBLA0A3L6PU481e-169A0A3L6PU48_PANMI; Uncharacterized protein
STRINGLPERR08G18570.11e-167(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-44bHLH family protein