PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000114G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 1258aa    MW: 139066 Da    PI: 6.6893
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000114G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.8e-2299199198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p+++ae++       + +++  ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  PH01000114G0050  99 FCKTLTASDTSTHGGFSVPRRYAEKIlppldfsM-QPPA-QELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RD 188
                      99*****************************954.4444.49************************************************..55 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      ++++l+++++ 
  PH01000114G0050 189 EKQQLLLGIRH 199
                      78888999986 PP
2Auxin_resp114.87.6e-38225308183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnP+as++eFv++++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  PH01000114G0050 225 AAHAAANTSTFTIFYNPKASPTEFVIPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 308
                      79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-4288228IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-4092214IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-1998190No hitNo description
PROSITE profilePS5086311.91499201IPR003340B3 DNA binding domain
PfamPF023625.8E-2099199IPR003340B3 DNA binding domain
SMARTSM010197.0E-2299201IPR003340B3 DNA binding domain
PfamPF065072.0E-32225308IPR010525Auxin response factor
PROSITE profilePS5174521.3089671047IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1258 aa     Download sequence    Send to blast
MKLTPASSAS VAAGPCEGEQ KAPAINAELW HACAGPLVSL PPVGSLVVYF PQGHSEQADP  60
DTDEVYAQMT LQPVNTYGKE ALQLSELALK QARPQMELFC KTLTASDTST HGGFSVPRRY  120
AEKILPPLDF SMQPPAQELQ ARDIHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG  180
DSVIFVRDEK QQLLLGIRHA SRQPTNIPSS VLSSDSMHIG VLAAAAHAAA NTSTFTIFYN  240
PKASPTEFVI PFAKYQKALY GNQISLGMRF RMMFETEELG TRRYMGTITG ISDLDPVRWK  300
NSQWRNLQVG WDESAAGERR NRVSIWEIEP VAAPFFICPQ PFFGVKHPRQ LDDESSEMEN  360
LFKRAMPWLG DEVCIKDTQT QNTTIPGLSL VQWMNMNRQQ SSSLTSTAMQ SEYLRSLSNP  420
AMQNLGAADL ARQLYMQNHL LQQNSMQFNS SKHPQQMQPI NDLSKATLPL NQLGAITNHQ  480
DQKQDAGSQQ RQQQTINQVI PLSQAQTNVV QAQVIVQNQM QQLQQQQQQR QQPSPTQNQQ  540
VASGQQLLLP HQQQDQNLQL QLQQQQLLLQ QQQLQQQQQQ LNKLPGQLVN LASQQTQLSD  600
QEVQLQLLQK LQQQSLMSQS AVTLSRLPLI QEQQKFLVDM QQQLSNSHSL VQQQMMPQED  660
SKASLQATPL PPPMQQEQQM KLSQKQVAPV DVSEVAFTPI PSTSVISKTG SAMMIPGAAQ  720
SVLTEERPCS TSPSTANGHH LAQPTIGRNE HCMISTEKLT QSTAPVSIPT SIEAVTATQI  780
ITKELPRLNN NVKPSVITSK LPNVVSDTQN FMNNALPTDN LETASSATSL WPSQTDGLLH  840
QGFPTANFNQ HQMFKGALPD VEMQGVDTNN SALFGMNNDG TLGFPLETEG LLVNALDSVK  900
YQNHISTDVE NNYRMQKDAQ QEISSSMVSQ SFGQSDMAFN SIDSAINDGA FLNRNSWPLA  960
PPPQRMRTFT KVYKRGAVGR SIDIGRFSGY EELKHALARM FGTEGQLEDR QRIGWKLVYK  1020
DHEDDILLLG DDPWELVNGL KPNPNPSQPT SIQHINPTQT NPLLHLQNPT QPNLDATLTQ  1080
PNPTQFPQYG FNPFLTHLQP ICNPSPTHPY PSIHLPAMPP AASATNTVIA VGRSSEQRSH  1140
HAAASPSIPS SYAVWEKERS EVAAHCVDLK PPPHESVGEK GWPRDVGKEA ASSRVVVQHV  1200
AFARAALRAP GRTAEDDLVA AVARLLQRCL DSPPTSPTAP QGRKVAAGPG CLDGEDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1412132947388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000114G0050
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688452.10.0PREDICTED: auxin response factor 5, partial
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLJ3L9I40.0J3L9I4_ORYBR; Auxin response factor
STRINGOB02G13010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-173auxin response factor 19