PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000110G0890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 174aa MW: 18903.8 Da PI: 10.7163 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 28.2 | 5e-09 | 23 | 65 | 42 | 86 |
trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 ++s +qC++k+++l+kry+ +++++ +++++ ++p+f l+ PH01000110G0890 23 ATHKSGVQCRHKIKKLRKRYRVEQARSVGHSKG--PKWPFFLLLH 65 5799************************98544..47****8776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.3E-8 | 24 | 66 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 174 aa Download sequence Send to blast |
MASFSPCELL RRWWPLEELP PTATHKSGVQ CRHKIKKLRK RYRVEQARSV GHSKGPKWPF 60 FLLLHDLAGG GAPDPSPNPI VKINPKGPAA TTATESPSSV SSPSFEEAVR SRSLHGLISN 120 GGGGGELRFT IPKASRTKPV AREAEAMGEV ASALWAVGEG FLRMEERRLE MVL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000110G0890 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP095965 | 1e-119 | FP095965.1 Phyllostachys edulis cDNA clone: bphylf045d08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574347.1 | 3e-67 | trihelix transcription factor ASIL2 | ||||
TrEMBL | I1I686 | 7e-66 | I1I686_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G33630.1 | 1e-66 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5689 | 32 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54390.1 | 2e-08 | sequence-specific DNA binding transcription factors |